Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1854439..1854584 | Replicon | chromosome |
| Accession | NZ_CP089877 | ||
| Organism | Klebsiella pneumoniae strain KP308 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1854475..1854577 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1854439..1854584 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LVQ70_RS08935 (LVQ70_08925) | 1849569..1851629 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LVQ70_RS08940 (LVQ70_08930) | 1851633..1852292 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LVQ70_RS08945 (LVQ70_08935) | 1852371..1852601 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LVQ70_RS08950 (LVQ70_08940) | 1852714..1853088 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LVQ70_RS08955 (LVQ70_08945) | 1853092..1853961 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| LVQ70_RS08960 (LVQ70_08950) | 1853978..1854316 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1854439..1854584 | - | 146 | - | - | Antitoxin |
| - | 1854475..1854577 | + | 103 | - | - | Toxin |
| LVQ70_RS08965 (LVQ70_08955) | 1854952..1855095 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LVQ70_RS08970 (LVQ70_08960) | 1855200..1856168 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LVQ70_RS08975 (LVQ70_08965) | 1856325..1856978 | + | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| LVQ70_RS08980 (LVQ70_08970) | 1856975..1857166 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LVQ70_RS08985 (LVQ70_08975) | 1857264..1857503 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LVQ70_RS08990 (LVQ70_08980) | 1857619..1859052 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T229535 NZ_CP089877:1854475-1854577 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT229535 NZ_CP089877:c1854584-1854439 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
