Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1909159..1909304 | Replicon | chromosome |
| Accession | NZ_CP089874 | ||
| Organism | Klebsiella pneumoniae strain KP106 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1909195..1909297 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1909159..1909304 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LVQ73_RS09360 | 1904289..1906349 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LVQ73_RS09365 | 1906353..1907012 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LVQ73_RS09370 | 1907091..1907321 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LVQ73_RS09375 | 1907434..1907808 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LVQ73_RS09380 | 1907812..1908681 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| LVQ73_RS09385 | 1908698..1909036 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1909159..1909304 | - | 146 | - | - | Antitoxin |
| - | 1909195..1909297 | + | 103 | - | - | Toxin |
| LVQ73_RS09390 | 1909672..1909815 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LVQ73_RS09395 | 1909920..1910888 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| LVQ73_RS09400 | 1911045..1911698 | + | 654 | WP_020804905.1 | protein-serine/threonine phosphatase | - |
| LVQ73_RS09405 | 1911695..1911886 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LVQ73_RS09410 | 1911984..1912223 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LVQ73_RS09415 | 1912339..1913772 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T229514 NZ_CP089874:1909195-1909297 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT229514 NZ_CP089874:c1909304-1909159 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
