Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1956236..1956381 | Replicon | chromosome |
| Accession | NZ_CP089870 | ||
| Organism | Klebsiella pneumoniae strain KP037 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1956272..1956374 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1956236..1956381 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LVQ68_RS09415 | 1951366..1953426 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| LVQ68_RS09420 | 1953430..1954089 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LVQ68_RS09425 | 1954168..1954398 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LVQ68_RS09430 | 1954511..1954885 | + | 375 | WP_023285314.1 | CopC domain-containing protein YobA | - |
| LVQ68_RS09435 | 1954889..1955758 | + | 870 | WP_023285313.1 | copper homeostasis membrane protein CopD | - |
| LVQ68_RS09440 | 1955775..1956113 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1956236..1956381 | - | 146 | - | - | Antitoxin |
| - | 1956272..1956374 | + | 103 | - | - | Toxin |
| LVQ68_RS09445 | 1956749..1956892 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LVQ68_RS09450 | 1956997..1957965 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LVQ68_RS09455 | 1958122..1958775 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| LVQ68_RS09460 | 1958772..1958963 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LVQ68_RS09465 | 1959061..1959300 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LVQ68_RS09470 | 1959416..1960849 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T229494 NZ_CP089870:1956272-1956374 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT229494 NZ_CP089870:c1956381-1956236 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
