Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2060572..2060715 Replicon chromosome
Accession NZ_CP089791
Organism Salmonella enterica subsp. enterica serovar Kentucky strain ZTA19/00820

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2060610..2060713 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2060572..2060715 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LUY13_RS10055 2056996..2057694 - 699 WP_000944282.1 exodeoxyribonuclease X -
LUY13_RS10060 2057718..2058374 - 657 WP_000100249.1 carbon-nitrogen hydrolase family protein -
LUY13_RS10065 2058482..2058712 - 231 WP_000856224.1 DNA polymerase III subunit theta -
LUY13_RS10070 2058850..2059224 + 375 WP_023205606.1 CopC domain-containing protein YobA -
LUY13_RS10075 2059225..2060100 + 876 WP_023223935.1 copper homeostasis membrane protein CopD -
LUY13_RS10080 2060117..2060470 + 354 WP_000722368.1 YebY family protein -
- 2060572..2060715 - 144 - - Antitoxin
- 2060610..2060713 + 104 - - Toxin
LUY13_RS10085 2060844..2061191 - 348 Protein_1972 tyrosine-type recombinase/integrase -
LUY13_RS10090 2061203..2061286 + 84 Protein_1973 phage tail protein -
LUY13_RS10095 2061460..2063394 + 1935 WP_024147907.1 NEL-type E3 ubiquitin ligase domain-containing protein -
LUY13_RS10105 2063536..2064064 + 529 Protein_1975 transposase -
LUY13_RS10110 2064210..2064350 - 141 WP_031607419.1 hypothetical protein -
LUY13_RS10115 2064516..2064784 - 269 Protein_1977 hypothetical protein -
LUY13_RS10120 2064824..2065024 + 201 WP_023223931.1 hypothetical protein -
LUY13_RS10125 2065153..2065572 + 420 WP_023205587.1 GNAT family N-acetyltransferase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- flank IS/Tn - - 2063726..2064064 338


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T229332 NZ_CP089791:2060610-2060713 [Salmonella enterica subsp. enterica serovar Kentucky]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 144 bp

>AT229332 NZ_CP089791:c2060715-2060572 [Salmonella enterica subsp. enterica serovar Kentucky]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References