Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | vapC-vagC/VapC-VagC |
Location | 3371106..3371743 | Replicon | chromosome |
Accession | NC_010804 | ||
Organism | Burkholderia multivorans ATCC 17616 |
Toxin (Protein)
Gene name | vapC | Uniprot ID | A0A0H3KIE2 |
Locus tag | BMULJ_RS15630 | Protein ID | WP_012212496.1 |
Coordinates | 3371106..3371507 (-) | Length | 134 a.a. |
Antitoxin (Protein)
Gene name | vagC | Uniprot ID | A0A0H3KN37 |
Locus tag | BMULJ_RS15635 | Protein ID | WP_012467744.1 |
Coordinates | 3371507..3371743 (-) | Length | 79 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
BMULJ_RS15620 | 3368427..3369569 | + | 1143 | WP_006401424.1 | alginate lyase family protein | - |
BMULJ_RS15625 | 3369596..3370984 | + | 1389 | WP_012212497.1 | L-serine ammonia-lyase | - |
BMULJ_RS15630 | 3371106..3371507 | - | 402 | WP_012212496.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
BMULJ_RS15635 | 3371507..3371743 | - | 237 | WP_012467744.1 | AbrB family transcriptional regulator | Antitoxin |
BMULJ_RS15640 | 3371931..3373634 | + | 1704 | WP_012212494.1 | thiamine pyrophosphate-binding protein | - |
BMULJ_RS15645 | 3373631..3374728 | + | 1098 | WP_012212493.1 | hypothetical protein | - |
BMULJ_RS15650 | 3374856..3375887 | - | 1032 | WP_012212492.1 | helix-turn-helix domain-containing protein | - |
BMULJ_RS15655 | 3376050..3376592 | - | 543 | WP_012467745.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 134 a.a. Molecular weight: 14930.10 Da Isoelectric Point: 6.2246
>T22906 WP_012212496.1 NC_010804:c3371507-3371106 [Burkholderia multivorans ATCC 17616]
MPRYMLDTNMCIYLMKNQPEQVARRFAQCYTGDVVMSAITYAELEYGVTVCANPARERRNLAALIEDIPVAPFDGAAAQA
YGPIREATRERKKDHLDKLIGAHAVSLDVVLVTNHERDFAGYPGLRLENWLTG
MPRYMLDTNMCIYLMKNQPEQVARRFAQCYTGDVVMSAITYAELEYGVTVCANPARERRNLAALIEDIPVAPFDGAAAQA
YGPIREATRERKKDHLDKLIGAHAVSLDVVLVTNHERDFAGYPGLRLENWLTG
Download Length: 402 bp
>T22906 NC_010804:c3371507-3371106 [Burkholderia multivorans ATCC 17616]
ATGCCGCGCTACATGCTCGACACCAACATGTGCATCTATCTGATGAAGAACCAGCCGGAGCAGGTCGCGCGGCGTTTCGC
GCAGTGCTACACGGGGGACGTCGTCATGTCGGCGATCACCTATGCGGAACTCGAGTACGGCGTGACGGTATGCGCCAATC
CGGCCCGCGAACGCCGCAATCTCGCCGCGCTGATCGAGGATATCCCGGTTGCGCCGTTCGACGGAGCGGCTGCGCAGGCA
TACGGCCCCATTCGCGAGGCGACGCGGGAACGCAAGAAGGATCATCTCGACAAGCTGATCGGCGCGCACGCGGTATCGCT
CGACGTCGTGCTGGTGACCAACCACGAGCGTGATTTCGCGGGTTATCCGGGCTTGAGGCTCGAGAACTGGCTGACCGGCT
AG
ATGCCGCGCTACATGCTCGACACCAACATGTGCATCTATCTGATGAAGAACCAGCCGGAGCAGGTCGCGCGGCGTTTCGC
GCAGTGCTACACGGGGGACGTCGTCATGTCGGCGATCACCTATGCGGAACTCGAGTACGGCGTGACGGTATGCGCCAATC
CGGCCCGCGAACGCCGCAATCTCGCCGCGCTGATCGAGGATATCCCGGTTGCGCCGTTCGACGGAGCGGCTGCGCAGGCA
TACGGCCCCATTCGCGAGGCGACGCGGGAACGCAAGAAGGATCATCTCGACAAGCTGATCGGCGCGCACGCGGTATCGCT
CGACGTCGTGCTGGTGACCAACCACGAGCGTGATTTCGCGGGTTATCCGGGCTTGAGGCTCGAGAACTGGCTGACCGGCT
AG
Antitoxin
Download Length: 79 a.a. Molecular weight: 8784.90 Da Isoelectric Point: 8.7077
>AT22906 WP_012467744.1 NC_010804:c3371743-3371507 [Burkholderia multivorans ATCC 17616]
MHTTRVFRNGNSQAVRIPADLAYERSDIELEIERVGDEIRIRPARRPLTGVLGKFAKFGPDFMAEGRGDQEQAERKGG
MHTTRVFRNGNSQAVRIPADLAYERSDIELEIERVGDEIRIRPARRPLTGVLGKFAKFGPDFMAEGRGDQEQAERKGG
Download Length: 237 bp
>AT22906 NC_010804:c3371743-3371507 [Burkholderia multivorans ATCC 17616]
ATGCATACCACCCGGGTCTTCCGGAATGGCAACTCGCAGGCGGTGCGGATTCCTGCGGATCTGGCTTATGAGCGCAGCGA
TATCGAACTCGAAATCGAGCGTGTCGGTGACGAAATTCGCATCCGGCCTGCGCGGCGGCCGCTGACCGGCGTGCTCGGCA
AGTTCGCGAAATTCGGGCCCGATTTCATGGCCGAGGGGCGCGGCGATCAGGAACAGGCCGAGCGCAAGGGTGGGTGA
ATGCATACCACCCGGGTCTTCCGGAATGGCAACTCGCAGGCGGTGCGGATTCCTGCGGATCTGGCTTATGAGCGCAGCGA
TATCGAACTCGAAATCGAGCGTGTCGGTGACGAAATTCGCATCCGGCCTGCGCGGCGGCCGCTGACCGGCGTGCTCGGCA
AGTTCGCGAAATTCGGGCCCGATTTCATGGCCGAGGGGCGCGGCGATCAGGAACAGGCCGAGCGCAAGGGTGGGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0H3KIE2 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0H3KN37 |