Detailed information of TA system TA228884

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/PIN(toxin)
• Location: 2854125..2854765
• Replicon: chromosome
• Accession: NZ_CP089775
• Organism: Mycobacterium tuberculosis strain 02-R1708

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TQ08
• Locus tag: LVJ70_RS13355
• Protein ID: WP_003412970.1
• Coordinates: 2854125..2854544 (-)
• Length: 140 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TQ09
• Locus tag: LVJ70_RS13360
• Protein ID: WP_003412975.1
• Coordinates: 2854541..2854765 (-)
• Length: 75 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
LVJ70_RS13325 (LVJ70_13325)	2849710..2850432	-	723	WP_003412957.1	DUF1906 domain-containing protein	-
LVJ70_RS13330 (LVJ70_13330)	2850949..2851176	+	228	WP_003412960.1	type II toxin-antitoxin system VapB family antitoxin	-
LVJ70_RS13335 (LVJ70_13335)	2851173..2851574	+	402	WP_003412963.1	PIN domain-containing protein	-
LVJ70_RS13340 (LVJ70_13340)	2851609..2852529	-	921	WP_003412965.1	restriction endonuclease	-
LVJ70_RS13345 (LVJ70_13345)	2852870..2853115	-	246	WP_071854223.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	-
LVJ70_RS13350 (LVJ70_13350)	2853174..2854124	+	951	WP_003911916.1	ERCC4 domain-containing protein	-
LVJ70_RS13355 (LVJ70_13355)	2854125..2854544	-	420	WP_003412970.1	type II toxin-antitoxin system VapC family toxin	Toxin
LVJ70_RS13360 (LVJ70_13360)	2854541..2854765	-	225	WP_003412975.1	antitoxin VapB39	Antitoxin
LVJ70_RS13365 (LVJ70_13365)	2854796..2857639	-	2844	WP_031649732.1	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	-
LVJ70_RS13370 (LVJ70_13370)	2857711..2858112	-	402	WP_003412981.1	hypothetical protein	-
LVJ70_RS13375 (LVJ70_13375)	2858112..2858582	-	471	WP_003899364.1	transcription antitermination factor NusB	-
LVJ70_RS13380 (LVJ70_13380)	2858585..2859148	-	564	WP_003412989.1	elongation factor P	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (4-128)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 140 a.a.
• Molecular weight: 14732.70 Da
• Isoelectric Point: 6.7519

>T228884 WP_003412970.1 NZ_CP089775:c2854544-2854125 [Mycobacterium tuberculosis]
VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTPAIAIAQLAAMTSLAGHTF
WPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVTFDAALADSASAGLVEVL

Nucleotide

• Length: 420 bp

>T228884 NZ_CP124353:c515043-514941 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin

Protein

• Length: 75 a.a.
• Molecular weight: 7993.94 Da
• Isoelectric Point: 4.0057

>AT228884 WP_003412975.1 NZ_CP089775:c2854765-2854541 [Mycobacterium tuberculosis]
MRTTLQIDDDVLEDARSIARSEGKSVGAVISELARRSLRPVGIVEVDGFPVFDVPPDAPTVTSEDVVRALEDDV

Nucleotide

• Length: 225 bp

>AT228884 NZ_CP124353:514903-515171 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Toxin

• AlphaFold DB: G0TQ08

Antitoxin

• AlphaFold DB: G0TQ09