Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) mazEF/MazF(toxin)
Location 1234057..1234688 Replicon chromosome
Accession NZ_CP089772
Organism Mycobacterium tuberculosis strain I0003165-3

Toxin (Protein)


Gene name mazF Uniprot ID P9WIH8
Locus tag LVJ67_RS05900 Protein ID WP_003898728.1
Coordinates 1234057..1234368 (-) Length 104 a.a.

Antitoxin (Protein)


Gene name mazE Uniprot ID G0TGZ7
Locus tag LVJ67_RS05905 Protein ID WP_003405836.1
Coordinates 1234368..1234688 (-) Length 107 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LVJ67_RS05880 (LVJ67_05875) 1229538..1230962 - 1425 WP_003405805.1 class II fumarate hydratase -
LVJ67_RS05885 (LVJ67_05880) 1230993..1232081 - 1089 WP_003898726.1 class II fructose-bisphosphatase -
LVJ67_RS05890 (LVJ67_05885) 1232137..1232781 + 645 WP_003915494.1 DUF4245 domain-containing protein -
LVJ67_RS05895 (LVJ67_05890) 1232788..1233945 - 1158 WP_003898727.1 AI-2E family transporter -
LVJ67_RS05900 (LVJ67_05895) 1234057..1234368 - 312 WP_003898728.1 type II toxin-antitoxin system toxin endoribonuclease MazF3 Toxin
LVJ67_RS05905 (LVJ67_05900) 1234368..1234688 - 321 WP_003405836.1 type II toxin-antitoxin system antitoxin MazE3 Antitoxin
LVJ67_RS05910 (LVJ67_05905) 1234698..1236234 + 1537 Protein_1164 carboxylesterase/lipase family protein -
LVJ67_RS05915 (LVJ67_05910) 1236241..1237352 - 1112 Protein_1165 3 beta-hydroxysteroid dehydrogenase/delta 5-->4-isomerase -
LVJ67_RS05920 (LVJ67_05915) 1237362..1237619 - 258 WP_003405844.1 exodeoxyribonuclease VII small subunit -
LVJ67_RS05925 (LVJ67_05920) 1237609..1238856 - 1248 WP_003405846.1 exodeoxyribonuclease VII large subunit -
LVJ67_RS05930 (LVJ67_05925) 1238853..1239491 - 639 WP_003898730.1 lipid droplet-associated protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(8-85)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 104 a.a.        Molecular weight: 11049.76 Da        Isoelectric Point: 4.9371

>T228680 WP_003898728.1 NZ_CP089772:c1234368-1234057 [Mycobacterium tuberculosis]
MRPIHIAQLDKARPVLILTREVVRPHLTNVTVAPITTTVRGLATEVPVDAVNGLNQPSVVSCDNTQTIPVCDLGRQIGYL
LASQEPALAEAIGNAFDLDWVVA

Download         Length: 312 bp

>T228680 NZ_CP089772:c1234368-1234057 [Mycobacterium tuberculosis]
ATGCGACCTATCCACATCGCACAGCTTGACAAGGCTAGACCCGTCCTGATCCTTACCCGCGAGGTCGTACGTCCGCACCT
CACGAACGTCACCGTCGCCCCGATCACGACAACCGTGCGTGGGCTAGCCACCGAAGTCCCGGTAGACGCGGTGAACGGGC
TGAATCAACCGTCAGTCGTCAGCTGCGACAACACCCAAACGATCCCGGTGTGTGACCTTGGTCGTCAAATCGGCTACCTG
CTCGCGTCGCAGGAGCCGGCTCTAGCCGAGGCCATCGGCAACGCGTTCGACCTCGATTGGGTGGTGGCATAG

Antitoxin


Download         Length: 107 a.a.        Molecular weight: 11394.83 Da        Isoelectric Point: 5.1236

>AT228680 WP_003405836.1 NZ_CP089772:c1234688-1234368 [Mycobacterium tuberculosis]
MYLPWGVVLAGGANGFGAGAYQTGTICEVSTQIAVRLPDEIVAFIDDEVRGQHARSRAAVVLRALERERRRRLAERDAEI
LATNTSATGDLDTLAGHCARTALDID

Download         Length: 321 bp

>AT228680 NZ_CP089772:c1234688-1234368 [Mycobacterium tuberculosis]
ATGTACCTACCCTGGGGGGTCGTCCTCGCCGGCGGCGCGAACGGTTTTGGGGCGGGTGCATACCAAACTGGTACCATCTG
TGAAGTGAGTACACAGATTGCGGTTCGCTTGCCCGATGAGATTGTCGCGTTCATCGACGACGAAGTCCGGGGACAGCATG
CCCGTAGCCGTGCGGCTGTCGTGCTGCGGGCGCTGGAACGGGAACGCCGCCGTCGTCTCGCCGAACGCGACGCGGAGATC
CTCGCCACCAACACGTCAGCCACGGGTGATCTGGATACGCTGGCCGGCCACTGCGCTCGTACCGCCCTCGACATCGACTG
A

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 5CCA
PDB 5UCT

Antitoxin

Source ID Structure
AlphaFold DB G0TGZ7

References