Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4320725..4320870 | Replicon | chromosome |
| Accession | NZ_CP089771 | ||
| Organism | Klebsiella pneumoniae strain HKE12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4320732..4320834 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4320725..4320870 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LVO50_RS20990 | 4316258..4317691 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LVO50_RS20995 | 4317807..4318046 | + | 240 | WP_002911393.1 | YebV family protein | - |
| LVO50_RS21000 | 4318144..4318335 | + | 192 | WP_002911395.1 | YebW family protein | - |
| LVO50_RS21005 | 4318332..4318985 | - | 654 | WP_004189273.1 | protein-serine/threonine phosphatase | - |
| LVO50_RS21010 | 4319142..4320110 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LVO50_RS21015 | 4320215..4320358 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4320725..4320870 | + | 146 | - | - | Antitoxin |
| - | 4320732..4320834 | - | 103 | - | - | Toxin |
| LVO50_RS21020 | 4320993..4321331 | - | 339 | WP_002911404.1 | YebY family protein | - |
| LVO50_RS21025 | 4321348..4322217 | - | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| LVO50_RS21030 | 4322221..4322595 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LVO50_RS21035 | 4322708..4322938 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LVO50_RS21040 | 4323017..4323675 | + | 659 | Protein_4120 | exodeoxyribonuclease X | - |
| LVO50_RS21045 | 4323679..4325739 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T228650 NZ_CP089771:c4320834-4320732 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAGGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAGGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT228650 NZ_CP089771:4320725-4320870 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCCTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCCTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
