Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1529426..1529571 | Replicon | chromosome |
| Accession | NZ_CP089768 | ||
| Organism | Klebsiella pneumoniae strain HKE9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1529462..1529564 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1529426..1529571 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LVO52_RS07390 | 1524557..1526617 | + | 2061 | WP_277695965.1 | oligopeptidase B | - |
| LVO52_RS07395 | 1526621..1527280 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LVO52_RS07400 | 1527359..1527589 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LVO52_RS07405 | 1527702..1528076 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LVO52_RS07410 | 1528080..1528949 | + | 870 | WP_040224089.1 | copper homeostasis membrane protein CopD | - |
| LVO52_RS07415 | 1528966..1529304 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1529426..1529571 | - | 146 | - | - | Antitoxin |
| - | 1529462..1529564 | + | 103 | - | - | Toxin |
| LVO52_RS07420 | 1529940..1530083 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LVO52_RS07425 | 1530188..1531156 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LVO52_RS07430 | 1531313..1531966 | + | 654 | WP_019725444.1 | protein-serine/threonine phosphatase | - |
| LVO52_RS07435 | 1531963..1532154 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LVO52_RS07440 | 1532252..1532491 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LVO52_RS07445 | 1532607..1534040 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T228623 NZ_CP089768:1529462-1529564 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT228623 NZ_CP089768:c1529571-1529426 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
