Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3715905..3716050 | Replicon | chromosome |
| Accession | NZ_CP089765 | ||
| Organism | Klebsiella pneumoniae strain HKC2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3715941..3716043 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3715905..3716050 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LVO53_RS18045 | 3711035..3713095 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LVO53_RS18050 | 3713099..3713758 | - | 660 | WP_004180433.1 | exodeoxyribonuclease X | - |
| LVO53_RS18055 | 3713837..3714067 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LVO53_RS18060 | 3714180..3714554 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LVO53_RS18065 | 3714558..3715427 | + | 870 | WP_277709594.1 | copper homeostasis membrane protein CopD | - |
| LVO53_RS18070 | 3715444..3715782 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 3715905..3716050 | - | 146 | - | - | Antitoxin |
| - | 3715941..3716043 | + | 103 | - | - | Toxin |
| LVO53_RS18075 | 3716419..3716562 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LVO53_RS18080 | 3716667..3717635 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LVO53_RS18085 | 3717792..3718445 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LVO53_RS18090 | 3718442..3718633 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LVO53_RS18095 | 3718731..3718970 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LVO53_RS18100 | 3719086..3720519 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T228608 NZ_CP089765:3715941-3716043 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT228608 NZ_CP089765:c3716050-3715905 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
