Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1271465..1271610 | Replicon | chromosome |
| Accession | NZ_CP089762 | ||
| Organism | Klebsiella pneumoniae strain HKC1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1271501..1271603 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1271465..1271610 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LVO51_RS06215 (LVO51_06195) | 1266595..1268655 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LVO51_RS06220 (LVO51_06200) | 1268659..1269318 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LVO51_RS06225 (LVO51_06205) | 1269397..1269627 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LVO51_RS06230 (LVO51_06210) | 1269740..1270114 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LVO51_RS06235 (LVO51_06215) | 1270118..1270987 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| LVO51_RS06240 (LVO51_06220) | 1271004..1271342 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1271465..1271610 | - | 146 | - | - | Antitoxin |
| - | 1271501..1271603 | + | 103 | - | - | Toxin |
| LVO51_RS06245 (LVO51_06225) | 1271978..1272121 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LVO51_RS06250 (LVO51_06230) | 1272226..1273194 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LVO51_RS06255 (LVO51_06235) | 1273351..1274004 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LVO51_RS06260 (LVO51_06240) | 1274001..1274192 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LVO51_RS06265 (LVO51_06245) | 1274290..1274529 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LVO51_RS06270 (LVO51_06250) | 1274645..1276078 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T228579 NZ_CP089762:1271501-1271603 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT228579 NZ_CP089762:c1271610-1271465 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
