Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1923995..1924229 | Replicon | chromosome |
| Accession | NC_010658 | ||
| Organism | Shigella boydii CDC 3083-94 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1923996..1924099 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1923995..1924229 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SBBS512_RS31680 | 1920899..1921596 | + | 698 | Protein_1984 | IS1 family transposase | - |
| SBBS512_RS29335 | 1921879..1922076 | + | 198 | Protein_1985 | metallophosphoesterase | - |
| SBBS512_RS12700 | 1923394..1923864 | + | 471 | WP_071821702.1 | tyrosine-type recombinase/integrase | - |
| - | 1923995..1924229 | + | 235 | - | - | Antitoxin |
| - | 1923996..1924099 | - | 104 | - | - | Toxin |
| SBBS512_RS12710 | 1924257..1924598 | - | 342 | WP_000976477.1 | YebY family protein | - |
| SBBS512_RS12715 | 1924611..1925483 | - | 873 | WP_000879299.1 | copper homeostasis membrane protein CopD | - |
| SBBS512_RS12720 | 1925487..1925861 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| SBBS512_RS12725 | 1926000..1926230 | + | 231 | WP_000916761.1 | DNA polymerase III subunit theta | - |
| SBBS512_RS12730 | 1926332..1926988 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| SBBS512_RS12735 | 1927012..1927674 | + | 663 | WP_000944259.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | ipaH9.8 | 1915133..1924598 | 9465 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T22851 NC_010658:c1924099-1923996 [Shigella boydii CDC 3083-94]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT22851 NC_010658:1923995-1924229 [Shigella boydii CDC 3083-94]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
