Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2071971..2072116 | Replicon | chromosome |
| Accession | NZ_CP089598 | ||
| Organism | Klebsiella pneumoniae strain KP29499 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2072007..2072109 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2071971..2072116 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LVE73_RS09915 | 2067101..2069161 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LVE73_RS09920 | 2069165..2069824 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LVE73_RS09925 | 2069903..2070133 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LVE73_RS09930 | 2070246..2070620 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LVE73_RS09935 | 2070624..2071493 | + | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| LVE73_RS09940 | 2071510..2071848 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2071971..2072116 | - | 146 | - | - | Antitoxin |
| - | 2072007..2072109 | + | 103 | - | - | Toxin |
| LVE73_RS09945 | 2072484..2072627 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LVE73_RS09950 | 2072732..2073700 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| LVE73_RS09955 | 2073857..2074510 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LVE73_RS09960 | 2074507..2074698 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LVE73_RS09965 | 2074796..2075035 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LVE73_RS09970 | 2075151..2076584 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T228415 NZ_CP089598:2072007-2072109 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT228415 NZ_CP089598:c2072116-2071971 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
