Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) ataRT/DUF1778(antitoxin)
Location 649930..650702 Replicon chromosome
Accession NZ_CP089532
Organism Pseudomonas veronii strain G2

Toxin (Protein)


Gene name ataT Uniprot ID -
Locus tag LUW10_RS02820 Protein ID WP_046487345.1
Coordinates 649930..650418 (-) Length 163 a.a.

Antitoxin (Protein)


Gene name ataR Uniprot ID -
Locus tag LUW10_RS02825 Protein ID WP_046487348.1
Coordinates 650409..650702 (-) Length 98 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LUW10_RS02800 (LUW10_02800) 645515..645886 - 372 WP_017849714.1 hypothetical protein -
LUW10_RS02805 (LUW10_02805) 646245..648314 + 2070 WP_232591179.1 AsmA family protein -
LUW10_RS02810 (LUW10_02810) 648496..649476 + 981 WP_232591180.1 hypothetical protein -
LUW10_RS02815 (LUW10_02815) 649473..649829 + 357 WP_046487343.1 hypothetical protein -
LUW10_RS02820 (LUW10_02820) 649930..650418 - 489 WP_046487345.1 GNAT family N-acetyltransferase Toxin
LUW10_RS02825 (LUW10_02825) 650409..650702 - 294 WP_046487348.1 DUF1778 domain-containing protein Antitoxin
LUW10_RS02830 (LUW10_02830) 651129..651659 - 531 WP_232591181.1 ferritin-like domain-containing protein -
LUW10_RS02835 (LUW10_02835) 651836..652726 + 891 WP_017849709.1 triacylglycerol lipase -
LUW10_RS02840 (LUW10_02840) 652839..653726 - 888 WP_193059093.1 DMT family transporter -
LUW10_RS02845 (LUW10_02845) 653871..654170 + 300 WP_017849707.1 PsiF family protein -
LUW10_RS02850 (LUW10_02850) 654344..655357 + 1014 WP_017849706.1 AI-2E family transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

GNAT domain

(76-146)

Antitoxin

Vibrio phage ICP1, Orf50

(8-96)


Sequences

Toxin        


Download         Length: 163 a.a.        Molecular weight: 17757.21 Da        Isoelectric Point: 7.9142

>T228358 WP_046487345.1 NZ_CP089532:c650418-649930 [Pseudomonas veronii]
VELKAPERLNDEHSLDQFDSGEQSINDYLHRQARKAQAAKQAVVYVVCRKDTAIVMGYYTLSSGSIARESVVPKSHQRNS
PSVHPVTLLGRMGITQEAQGQGYAIDLLQDAVERAISASNTIGSSAMIVHPLNERLSSFYTKYAGFIPCPGLSPITLMLP
LR

Download         Length: 489 bp

>T228358 NZ_CP123852:1191514-1191702 [Staphylococcus aureus]
ATGTCTTTACATTTTGCAATTCTGTTTTGGCTAGCATTAATTTTCTTAGTTGCCGCTACGTTTATACTCGTATTAATGAA
AAAAACTGGCAAAGAATCTAAAAAAGAGTCCTATTTAAGTTTCACTGTCATTCTCTATATTTTTGGATTCGCTATATTAA
TATACACATTTATATTTGGTGTGCTATAA

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 11062.86 Da        Isoelectric Point: 6.3397

>AT228358 WP_046487348.1 NZ_CP089532:c650702-650409 [Pseudomonas veronii]
MTAIIESIEKSKPVPINMRADEKKRNLIDLAAAMSGRDRTSFILEAACQKAEEVILEKRLFLLDDVAFDAFEQAMDANPI
RGNKCLQQLLERPKRWS

Download         Length: 294 bp

>AT228358 NZ_CP123852:1191225-1191485 [Staphylococcus aureus]
ATGAATAACATTTTGTTAAATGCTATCAATATAGTTATTACTACCACTTTTGTTATCTTTAATATTTTAATCACATATAA
TAAAGATTTAGATGATTTATGTTGGCTCCTGCCTGGTATTATCATTTGTGGTGTGATACTCATCGTATCCTTTACCATTG
CAATGATAACTAAAAACTGGTTAAGTGAAATATTATTTTTTATAAATATCGTACTCGTTCTATATTACATTTATCCTATT
TTTTATAGTTTTATAGGTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References