Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | mazEF/MazF(toxin) |
| Location | 485007..485644 | Replicon | chromosome |
| Accession | NZ_CP089530 | ||
| Organism | Bacillus amyloliquefaciens strain LS1-002-014s | ||
Toxin (Protein)
| Gene name | mazF | Uniprot ID | G4NU33 |
| Locus tag | LUA14_RS02490 | Protein ID | WP_003156187.1 |
| Coordinates | 485294..485644 (+) | Length | 117 a.a. |
Antitoxin (Protein)
| Gene name | mazE | Uniprot ID | I2HMS5 |
| Locus tag | LUA14_RS02485 | Protein ID | WP_003156188.1 |
| Coordinates | 485007..485288 (+) | Length | 94 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LUA14_RS02465 (481372) | 481372..481971 | - | 600 | WP_003156193.1 | rhomboid family intramembrane serine protease | - |
| LUA14_RS02470 (482064) | 482064..482429 | + | 366 | WP_007410229.1 | holo-ACP synthase | - |
| LUA14_RS02475 (482594) | 482594..483601 | + | 1008 | WP_007410230.1 | outer membrane lipoprotein carrier protein LolA | - |
| LUA14_RS02480 (483718) | 483718..484887 | + | 1170 | WP_025284272.1 | alanine racemase | - |
| LUA14_RS02485 (485007) | 485007..485288 | + | 282 | WP_003156188.1 | type II toxin-antitoxin system antitoxin EndoAI | Antitoxin |
| LUA14_RS02490 (485294) | 485294..485644 | + | 351 | WP_003156187.1 | type II toxin-antitoxin system endoribonuclease NdoA | Toxin |
| LUA14_RS02495 (485762) | 485762..486583 | + | 822 | WP_003156182.1 | STAS domain-containing protein | - |
| LUA14_RS02500 (486588) | 486588..486953 | + | 366 | WP_003156180.1 | RsbT antagonist protein RsbS | - |
| LUA14_RS02505 (486956) | 486956..487357 | + | 402 | WP_003156178.1 | anti-sigma regulatory factor | - |
| LUA14_RS02510 (487369) | 487369..488376 | + | 1008 | WP_052827076.1 | PP2C family protein-serine/threonine phosphatase | - |
| LUA14_RS02515 (488440) | 488440..488769 | + | 330 | WP_003156176.1 | anti-sigma factor antagonist RsbV | - |
| LUA14_RS02520 (488766) | 488766..489248 | + | 483 | WP_003156173.1 | anti-sigma B factor RsbW | - |
| LUA14_RS02525 (489214) | 489214..490002 | + | 789 | WP_003156171.1 | RNA polymerase sigma factor SigB | - |
| LUA14_RS02530 (490002) | 490002..490604 | + | 603 | WP_007410234.1 | PP2C family serine/threonine-protein phosphatase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 117 a.a. Molecular weight: 12977.98 Da Isoelectric Point: 4.8781
>T228354 WP_003156187.1 NZ_CP089530:485294-485644 [Bacillus amyloliquefaciens]
MIVKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFSPTAIVAAITAQIQKAKLPTHVEIDAKRYGFERDSVILLEQI
RTIDKQRLTDKITHLDDEMMDKVDEALQISLALIDF
MIVKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFSPTAIVAAITAQIQKAKLPTHVEIDAKRYGFERDSVILLEQI
RTIDKQRLTDKITHLDDEMMDKVDEALQISLALIDF
Download Length: 351 bp
>T228354 NZ_CP123849:361622-362119 [Agrobacterium fabacearum]
GTGACTCTCAGCGCACCAGTCCCCCTGGCCGATCATCACGAACTGGCCGAATTCAATTCTGGAGTACCTGAACTGGACGA
CTGGCTTCGGCGCCGTGCCCGGGCCAATCAAGCAGGCGGCGCGTCGCGGACCTTTGTCGTTTGCGACGAGAGCCGCGTCA
TCGCGTACTACGCCCTGGCCTCTGGCTCCGTGAAACCGCCGGAAGTGCCTGGTCGCTTTCGGCGCAATATGCCTGATCCA
ATCCCAGTTGCAGTGCTTGGCCGCCTCGCCATTGATCAATCCTGTCAAGGGCGTGGTATCGGCAGGGCATTGGTGCGCGA
CGCGGGTTTGCGCCTGCTGAATGCCGCTGAAGTGCTCGGGATCCGCGGCGTGCTGGTCCATGCGATTTCTGATGACGCAC
GAGCCTTCTACGAAGCCGTCGGCTTCCTGTCTTCTCCGTCCGATCCCATGATGCTGATGGTCGGTTTGCACGACCTCAAT
AACGCGCTGAACACCTAA
GTGACTCTCAGCGCACCAGTCCCCCTGGCCGATCATCACGAACTGGCCGAATTCAATTCTGGAGTACCTGAACTGGACGA
CTGGCTTCGGCGCCGTGCCCGGGCCAATCAAGCAGGCGGCGCGTCGCGGACCTTTGTCGTTTGCGACGAGAGCCGCGTCA
TCGCGTACTACGCCCTGGCCTCTGGCTCCGTGAAACCGCCGGAAGTGCCTGGTCGCTTTCGGCGCAATATGCCTGATCCA
ATCCCAGTTGCAGTGCTTGGCCGCCTCGCCATTGATCAATCCTGTCAAGGGCGTGGTATCGGCAGGGCATTGGTGCGCGA
CGCGGGTTTGCGCCTGCTGAATGCCGCTGAAGTGCTCGGGATCCGCGGCGTGCTGGTCCATGCGATTTCTGATGACGCAC
GAGCCTTCTACGAAGCCGTCGGCTTCCTGTCTTCTCCGTCCGATCCCATGATGCTGATGGTCGGTTTGCACGACCTCAAT
AACGCGCTGAACACCTAA
Antitoxin
Download Length: 94 a.a. Molecular weight: 10562.92 Da Isoelectric Point: 6.4706
>AT228354 WP_003156188.1 NZ_CP089530:485007-485288 [Bacillus amyloliquefaciens]
MSESSARTEMKISLPENLVAELDGVAMREKRSRNELISQAVRAYVSERTTRHNRDLMRRGYMEMAKINLNISSEAHYAEC
EAETTVERLVSGG
MSESSARTEMKISLPENLVAELDGVAMREKRSRNELISQAVRAYVSERTTRHNRDLMRRGYMEMAKINLNISSEAHYAEC
EAETTVERLVSGG
Download Length: 282 bp
>AT228354 NZ_CP123849:361329-361625 [Agrobacterium fabacearum]
ATGCCGACCTCACACACGGGTAAGAGCCCGGACGCAAGTGTGCCGCTGAATATGCGCATCAAACCTGCTACTCGCAACTT
GATCGATCGCGCCGCGGAGTTGCTCGGCAAAACGCGCACAGATTTCATGTTGGAAGCTTCCGAGCGCCGTGCGGAGGAGG
TGCTGCTCGACCGTACAATCGTCACGGTAAGCCCCGAAATTTATGCCGAATATCTTGCCCGTCTCGATGCGCCTGCACAG
CCCAATGAGCGTCTAAAGCGCACGATGTCGACCAAAGCGCCCTGGGATGAGGCGTGA
ATGCCGACCTCACACACGGGTAAGAGCCCGGACGCAAGTGTGCCGCTGAATATGCGCATCAAACCTGCTACTCGCAACTT
GATCGATCGCGCCGCGGAGTTGCTCGGCAAAACGCGCACAGATTTCATGTTGGAAGCTTCCGAGCGCCGTGCGGAGGAGG
TGCTGCTCGACCGTACAATCGTCACGGTAAGCCCCGAAATTTATGCCGAATATCTTGCCCGTCTCGATGCGCCTGCACAG
CCCAATGAGCGTCTAAAGCGCACGATGTCGACCAAAGCGCCCTGGGATGAGGCGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|