Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2085962..2086130 | Replicon | chromosome |
| Accession | NZ_CP089448 | ||
| Organism | Klebsiella michiganensis strain 8-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2086020..2086123 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2085962..2086130 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LT930_RS09925 (LT930_09925) | 2081089..2083149 | + | 2061 | WP_033836507.1 | oligopeptidase B | - |
| LT930_RS09930 (LT930_09930) | 2083156..2083815 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| LT930_RS09935 (LT930_09935) | 2083894..2084124 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| LT930_RS09940 (LT930_09940) | 2084260..2084634 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| LT930_RS09945 (LT930_09945) | 2084639..2085508 | + | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| LT930_RS09950 (LT930_09950) | 2085525..2085863 | + | 339 | WP_064375491.1 | YebY family protein | - |
| - | 2085962..2086130 | - | 169 | - | - | Antitoxin |
| - | 2086020..2086123 | + | 104 | - | - | Toxin |
| LT930_RS09955 (LT930_09955) | 2086248..2087207 | - | 960 | WP_046878049.1 | spore coat protein U domain-containing protein | - |
| LT930_RS09960 (LT930_09960) | 2087222..2089552 | - | 2331 | WP_047723554.1 | fimbria/pilus outer membrane usher protein | - |
| LT930_RS09965 (LT930_09965) | 2089555..2090319 | - | 765 | WP_049102470.1 | fimbria/pilus periplasmic chaperone | - |
| LT930_RS09970 (LT930_09970) | 2090338..2090856 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T228315 NZ_CP089448:2086020-2086123 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT228315 NZ_CP089448:c2086130-2085962 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
