Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2630574..2630842 | Replicon | chromosome |
| Accession | NZ_CP089445 | ||
| Organism | Escherichia coli strain 5-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2630612..2630714 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2630574..2630842 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LT922_RS12940 | 2627732..2629171 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LT922_RS12945 | 2629288..2629524 | + | 237 | WP_001295499.1 | YebV family protein | - |
| LT922_RS12950 | 2629629..2629820 | + | 192 | WP_001296140.1 | YebW family protein | - |
| LT922_RS12955 | 2629821..2630477 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 2630574..2630842 | + | 269 | - | - | Antitoxin |
| - | 2630612..2630714 | - | 103 | - | - | Toxin |
| LT922_RS12960 | 2630872..2631213 | - | 342 | WP_000976472.1 | YebY family protein | - |
| LT922_RS12965 | 2631226..2632098 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| LT922_RS12970 | 2632102..2632476 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LT922_RS12975 | 2632615..2632845 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LT922_RS12980 | 2632947..2633603 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LT922_RS12985 | 2633627..2634289 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T228287 NZ_CP089445:c2630714-2630612 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT228287 NZ_CP089445:2630574-2630842 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
