Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1943842..1943987 | Replicon | chromosome |
| Accession | NZ_CP089427 | ||
| Organism | Klebsiella pneumoniae strain 1194 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1943878..1943980 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1943842..1943987 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A9X66_RS09435 (A9X66_009435) | 1938972..1941032 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| A9X66_RS09440 (A9X66_009440) | 1941036..1941695 | - | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| A9X66_RS09445 (A9X66_009445) | 1941774..1942004 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| A9X66_RS09450 (A9X66_009450) | 1942117..1942491 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| A9X66_RS09455 (A9X66_009455) | 1942495..1943364 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| A9X66_RS09460 (A9X66_009460) | 1943381..1943719 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1943842..1943987 | - | 146 | - | - | Antitoxin |
| - | 1943878..1943980 | + | 103 | - | - | Toxin |
| A9X66_RS09465 (A9X66_009465) | 1944355..1944498 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| A9X66_RS09470 (A9X66_009470) | 1944603..1945571 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| A9X66_RS09475 (A9X66_009475) | 1945728..1946381 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| A9X66_RS09480 (A9X66_009480) | 1946378..1946569 | - | 192 | WP_002911395.1 | YebW family protein | - |
| A9X66_RS09485 (A9X66_009485) | 1946667..1946906 | - | 240 | WP_002911393.1 | YebV family protein | - |
| A9X66_RS09490 (A9X66_009490) | 1947022..1948455 | - | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T228213 NZ_CP089427:1943878-1943980 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT228213 NZ_CP089427:c1943987-1943842 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
