Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | rlegTA/AbiEii-AbiEi |
| Location | 3370921..3372440 | Replicon | chromosome |
| Accession | NZ_CP089415 | ||
| Organism | Xanthomonas oryzae pv. oryzae strain GXO2016 | ||
Toxin (Protein)
| Gene name | rlegT | Uniprot ID | A0A0K0GMB6 |
| Locus tag | LUZ17_RS15725 | Protein ID | WP_011259680.1 |
| Coordinates | 3370921..3371844 (-) | Length | 308 a.a. |
Antitoxin (Protein)
| Gene name | rlegA | Uniprot ID | A0A854CLN1 |
| Locus tag | LUZ17_RS15730 | Protein ID | WP_011409027.1 |
| Coordinates | 3371841..3372440 (-) | Length | 200 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LUZ17_RS15700 (LUZ17_15700) | 3367114..3367646 | + | 533 | Protein_3003 | methyltransferase domain-containing protein | - |
| LUZ17_RS15705 (LUZ17_15705) | 3367663..3368151 | - | 489 | WP_011409022.1 | hypothetical protein | - |
| LUZ17_RS15710 (LUZ17_15710) | 3368246..3369211 | + | 966 | Protein_3005 | IS1595-like element ISXo5 family transposase | - |
| LUZ17_RS15715 (LUZ17_15715) | 3369663..3369905 | - | 243 | WP_011409025.1 | hypothetical protein | - |
| LUZ17_RS15720 (LUZ17_15720) | 3370371..3370841 | + | 471 | WP_228383551.1 | helix-turn-helix domain-containing protein | - |
| LUZ17_RS15725 (LUZ17_15725) | 3370921..3371844 | - | 924 | WP_011259680.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin |
| LUZ17_RS15730 (LUZ17_15730) | 3371841..3372440 | - | 600 | WP_011409027.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | Antitoxin |
| LUZ17_RS15735 (LUZ17_15735) | 3372805..3373095 | + | 291 | WP_228329665.1 | FaeA/PapI family transcriptional regulator | - |
| LUZ17_RS15740 (LUZ17_15740) | 3373127..3373702 | + | 576 | WP_011409029.1 | BrxE family protein | - |
| LUZ17_RS15745 (LUZ17_15745) | 3373684..3374715 | - | 1032 | WP_042465093.1 | IS630 family transposase | - |
| LUZ17_RS15755 (LUZ17_15755) | 3375214..3375504 | + | 291 | WP_011409031.1 | hypothetical protein | - |
| LUZ17_RS15760 (LUZ17_15760) | 3375485..3375952 | + | 468 | WP_181718264.1 | hypothetical protein | - |
| LUZ17_RS15770 (LUZ17_15770) | 3376222..3376758 | + | 537 | WP_011409032.1 | lipocalin family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 308 a.a. Molecular weight: 34114.16 Da Isoelectric Point: 5.4588
>T228207 WP_011259680.1 NZ_CP089415:c3371844-3370921 [Xanthomonas oryzae pv. oryzae]
MNEPDKSRRTVAASVRARLLNKARAERLDFNLLLTRYALERVLYRLSVSEQQGQFLLKGALLFDIWFDIPHRPTHDADLL
GFGSTEIPHLEDLFRRISQIASDDGIVFQADSVKAAEIRKEANYAGVRVTMIGLLDGARCTVQIDIGFGDAVTPGPDNVQ
YPVILDGMPQPQLRVYPRYTVVAEKLEAMVKLGILNSRMKDYFDLWVLAGHSDFDGAVLATAIRATFECRGTAIPPGAPL
GLTDEFGLDEQKTKQWQAFLRKNTLEPMPLTTVIEALREFVLPVLAALAAGEGFDRQWRAGAGWDAA
MNEPDKSRRTVAASVRARLLNKARAERLDFNLLLTRYALERVLYRLSVSEQQGQFLLKGALLFDIWFDIPHRPTHDADLL
GFGSTEIPHLEDLFRRISQIASDDGIVFQADSVKAAEIRKEANYAGVRVTMIGLLDGARCTVQIDIGFGDAVTPGPDNVQ
YPVILDGMPQPQLRVYPRYTVVAEKLEAMVKLGILNSRMKDYFDLWVLAGHSDFDGAVLATAIRATFECRGTAIPPGAPL
GLTDEFGLDEQKTKQWQAFLRKNTLEPMPLTTVIEALREFVLPVLAALAAGEGFDRQWRAGAGWDAA
Download Length: 924 bp
>T228207 NZ_CP123499:1882909-1883238 [Arsenophonus sp. aPb]
ATGAAATATACGATTGAGTATTACAGCGAAGAAGTTGAAAAAGACATCCTCTCCCTCCCTGACACCATTCAGGCAAGATA
CATTCGTTATACTGAAAAAATGCGTATTTATGGTGCTAACCTGGGAGAACCTCACACGAGTTCTTTTGGTGATGGCCTTT
TCGAACTCAGGCTTAAAGGCTGTGAAGGAATAGGTAGAGTCTTTTATTGCACATTGATAGGAAAACGGATTGTTATGTTG
CATAGTTTCATAAAAAAGACCAACAAGACACCTATCAAAGAACGCCAAAAAGCAGAAAAAAGACTGAAAGAGGTTAAATA
TGGCAAATAA
ATGAAATATACGATTGAGTATTACAGCGAAGAAGTTGAAAAAGACATCCTCTCCCTCCCTGACACCATTCAGGCAAGATA
CATTCGTTATACTGAAAAAATGCGTATTTATGGTGCTAACCTGGGAGAACCTCACACGAGTTCTTTTGGTGATGGCCTTT
TCGAACTCAGGCTTAAAGGCTGTGAAGGAATAGGTAGAGTCTTTTATTGCACATTGATAGGAAAACGGATTGTTATGTTG
CATAGTTTCATAAAAAAGACCAACAAGACACCTATCAAAGAACGCCAAAAAGCAGAAAAAAGACTGAAAGAGGTTAAATA
TGGCAAATAA
Antitoxin
Download Length: 200 a.a. Molecular weight: 22037.74 Da Isoelectric Point: 10.1240
>AT228207 WP_011409027.1 NZ_CP089415:c3372440-3371841 [Xanthomonas oryzae pv. oryzae]
MDTTVDKLLELVRTRGLLRPHDLAPLGIPRVALTRAVRRGQLERVGRGLYGLVARPVSAHGTLAEVARRVPKGVVCLLSA
LRVHDLTTQAPFEVWLAIDNKAAAPKLDYPPLRLVRFSGPALSEGVEEHVVDGVPVHVTSVAKTVADCFKYRNKIGIDVA
LEALREAWVARRMTSDEIWHYAKIDRVANVMRPYLESLA
MDTTVDKLLELVRTRGLLRPHDLAPLGIPRVALTRAVRRGQLERVGRGLYGLVARPVSAHGTLAEVARRVPKGVVCLLSA
LRVHDLTTQAPFEVWLAIDNKAAAPKLDYPPLRLVRFSGPALSEGVEEHVVDGVPVHVTSVAKTVADCFKYRNKIGIDVA
LEALREAWVARRMTSDEIWHYAKIDRVANVMRPYLESLA
Download Length: 600 bp
>AT228207 NZ_CP123499:1883228-1883530 [Arsenophonus sp. aPb]
ATGGCAAATAAACGCACCATGATGACACATGATGAATTAGTCGAAAAAATGTTATCTAATCCAAAGGTAAAAGCAGAATA
CGATGCTATCGCTGAAGAATTTGCTCTGCTAGATGAGATTTTAGCTGCTCGCAAAAATGCAGGATTAACACAAGAACAAC
TTGCTAAACGAATGGGCACTAAAGCGACCGCAATAACACGTATGGAAAGTAACCTTGCTTCTGGTGTTAGTGGACCTTCG
TTTTCTACCCTAAAAAAATTAGCAAAAGCAACCGGCAAAAAATTACAAATCCGCTTCGTATAA
ATGGCAAATAAACGCACCATGATGACACATGATGAATTAGTCGAAAAAATGTTATCTAATCCAAAGGTAAAAGCAGAATA
CGATGCTATCGCTGAAGAATTTGCTCTGCTAGATGAGATTTTAGCTGCTCGCAAAAATGCAGGATTAACACAAGAACAAC
TTGCTAAACGAATGGGCACTAAAGCGACCGCAATAACACGTATGGAAAGTAACCTTGCTTCTGGTGTTAGTGGACCTTCG
TTTTCTACCCTAAAAAAATTAGCAAAAGCAACCGGCAAAAAATTACAAATCCGCTTCGTATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0K0GMB6 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A854CLN1 |