Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 1084473..1085218 Replicon chromosome
Accession NZ_CP089415
Organism Xanthomonas oryzae pv. oryzae strain GXO2016

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag LUZ17_RS05235 Protein ID WP_199285672.1
Coordinates 1084889..1085218 (-) Length 110 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag LUZ17_RS05230 Protein ID WP_011407754.1
Coordinates 1084473..1084892 (-) Length 140 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LUZ17_RS05210 (LUZ17_05210) 1080761..1081087 - 327 Protein_986 hypothetical protein -
LUZ17_RS05215 (LUZ17_05215) 1081389..1082624 + 1236 WP_011257570.1 ISL3-like element ISXoo13 family transposase -
LUZ17_RS05220 (LUZ17_05220) 1082662..1083318 - 657 WP_075246166.1 phosphate phosphatase -
LUZ17_RS05225 (LUZ17_05225) 1083453..1084421 - 969 WP_011258802.1 IS5-like element ISXo1 family transposase -
LUZ17_RS05230 (LUZ17_05230) 1084473..1084892 - 420 WP_011407754.1 macro domain-containing protein Antitoxin
LUZ17_RS05235 (LUZ17_05235) 1084889..1085218 - 330 WP_199285672.1 DUF4433 domain-containing protein Toxin
LUZ17_RS05240 (LUZ17_05240) 1085321..1086640 + 1320 WP_109182117.1 IS701-like element ISXo15 family transposase -
LUZ17_RS05245 (LUZ17_05245) 1086684..1087019 - 336 WP_011407757.1 DarT ssDNA thymidine ADP-ribosyltransferase family protein -
LUZ17_RS05250 (LUZ17_05250) 1087351..1088277 - 927 WP_011257932.1 Grx4 family monothiol glutaredoxin -
LUZ17_RS05255 (LUZ17_05255) 1088323..1089114 + 792 WP_011407758.1 polysaccharide deacetylase family protein -
LUZ17_RS05265 (LUZ17_05265) 1089416..1090087 - 672 WP_011407759.1 class I SAM-dependent methyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside IScluster/Tn - - 1081389..1086640 5251


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(3-108)

Antitoxin

Macro domain

(18-130)


Sequences

Toxin        


Download         Length: 110 a.a.        Molecular weight: 13145.86 Da        Isoelectric Point: 7.1160

>T228205 WP_199285672.1 NZ_CP089415:c1085218-1084889 [Xanthomonas oryzae pv. oryzae]
MHHVAERRWPFLFTDSHAYCQLASFYSDLSDLDKIDWPLLQARDFRRDPDDPAKFERYQAEALIHRHLPLDGLRGIVCHT
DGLKQTIERQLQERNLKLPVHTRTDWYFR

Download         Length: 330 bp

>T228205 NZ_CP123499:c1163852-1163601 [Arsenophonus sp. aPb]
ATGAAAACAGTCAATTATACCGATGCAAGACAAAACTTAACCTCTATCATGAATGAAGCAATAGATGATCGGATCCCAAT
TTTAATCACTAGACAAAAAGGGATTCCTTGCGTTTTGTTATCCCTTGATGAATACCAATCTTTAGAAGAGACGGCCTACT
TGCTGCGCTCGCCAGCTAATGCTCGTCATCTATTGGATTCAATTGATGAACTCAATGCCGGTAAAGGAATTGAAAGAGAT
ATTCAGGAATGA

Antitoxin


Download         Length: 140 a.a.        Molecular weight: 15607.02 Da        Isoelectric Point: 6.4733

>AT228205 WP_011407754.1 NZ_CP089415:c1084892-1084473 [Xanthomonas oryzae pv. oryzae]
MITFTQGNLLESGAEALVNTVNTVGVMGKGIALMFKERFKENFLRYAAACKDNQVRIGKIFVTEVNELDGPRWIINFPTK
QHWRGDSRIEWITEGLQDLHRFLIENKVKSIAIPPLGAGNGGLDWAEVRPLIEEVLGNL

Download         Length: 420 bp

>AT228205 NZ_CP123499:c1163604-1163347 [Arsenophonus sp. aPb]
ATGAAATTAATATTTACCGAACAATCATGGAACGATTACCTTTATTGGCAGCAGATAGATAAAAAGATAATTAAACGTAT
TAATGAATTAATTAAAGATATTAAAAGAGAACCTTTTTCTGGTATAGGTAAGCCAGAGCCTTTAAAACACAATTTAACCG
CTTTTTGGTCGCGCAGAATAACTGAGGAACATCGTTTAATTTACCGGTTAACAGATAAGGGCTTAGAGATAGCTTCATGT
CGTTATTACTATAATTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References