Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 809016..809184 | Replicon | chromosome |
| Accession | NZ_CP089407 | ||
| Organism | Klebsiella michiganensis strain Kox101 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 809074..809177 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 809016..809184 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LUW94_RS03775 (LUW94_03775) | 804143..806203 | + | 2061 | WP_033836507.1 | oligopeptidase B | - |
| LUW94_RS03780 (LUW94_03780) | 806210..806869 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| LUW94_RS03785 (LUW94_03785) | 806948..807178 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| LUW94_RS03790 (LUW94_03790) | 807314..807688 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| LUW94_RS03795 (LUW94_03795) | 807693..808562 | + | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| LUW94_RS03800 (LUW94_03800) | 808579..808917 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 809016..809184 | - | 169 | - | - | Antitoxin |
| - | 809074..809177 | + | 104 | - | - | Toxin |
| LUW94_RS03805 (LUW94_03805) | 809302..810261 | - | 960 | WP_202019972.1 | spore coat protein U domain-containing protein | - |
| LUW94_RS03810 (LUW94_03810) | 810276..812606 | - | 2331 | WP_109241214.1 | fimbria/pilus outer membrane usher protein | - |
| LUW94_RS03815 (LUW94_03815) | 812609..813373 | - | 765 | WP_025106133.1 | fimbria/pilus periplasmic chaperone | - |
| LUW94_RS03820 (LUW94_03820) | 813392..813910 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T228183 NZ_CP089407:809074-809177 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT228183 NZ_CP089407:c809184-809016 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
