Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3668035..3668203 | Replicon | chromosome |
| Accession | NZ_CP089395 | ||
| Organism | Klebsiella michiganensis strain Kox58 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3668042..3668145 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3668035..3668203 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LUW95_RS17295 (LUW95_17295) | 3663309..3663827 | + | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
| LUW95_RS17300 (LUW95_17300) | 3663846..3664610 | + | 765 | WP_032694916.1 | fimbria/pilus periplasmic chaperone | - |
| LUW95_RS17305 (LUW95_17305) | 3664613..3666943 | + | 2331 | WP_088168006.1 | fimbria/pilus outer membrane usher protein | - |
| LUW95_RS17310 (LUW95_17310) | 3666958..3667917 | + | 960 | WP_232421157.1 | spore coat protein U domain-containing protein | - |
| - | 3668035..3668203 | + | 169 | - | - | Antitoxin |
| - | 3668042..3668145 | - | 104 | - | - | Toxin |
| LUW95_RS17315 (LUW95_17315) | 3668302..3668640 | - | 339 | WP_004103344.1 | YebY family protein | - |
| LUW95_RS17320 (LUW95_17320) | 3668657..3669526 | - | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| LUW95_RS17325 (LUW95_17325) | 3669531..3669905 | - | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| LUW95_RS17330 (LUW95_17330) | 3670041..3670271 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| LUW95_RS17335 (LUW95_17335) | 3670350..3671009 | + | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| LUW95_RS17340 (LUW95_17340) | 3671016..3673076 | - | 2061 | WP_014229840.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T228154 NZ_CP089395:c3668145-3668042 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT228154 NZ_CP089395:3668035-3668203 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
