Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1839212..1839357 | Replicon | chromosome |
| Accession | NZ_CP089383 | ||
| Organism | Klebsiella pneumoniae strain KPN342 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1839248..1839350 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1839212..1839357 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LUX38_RS08920 | 1834342..1836402 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LUX38_RS08925 | 1836406..1837065 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LUX38_RS08930 | 1837144..1837374 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LUX38_RS08935 | 1837487..1837861 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LUX38_RS08940 | 1837865..1838734 | + | 870 | WP_004184661.1 | copper homeostasis membrane protein CopD | - |
| LUX38_RS08945 | 1838751..1839089 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1839212..1839357 | - | 146 | - | - | Antitoxin |
| - | 1839248..1839350 | + | 103 | - | - | Toxin |
| LUX38_RS08950 | 1839725..1839868 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LUX38_RS08955 | 1839973..1840941 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| LUX38_RS08960 | 1841098..1841751 | + | 654 | WP_004175436.1 | protein-serine/threonine phosphatase | - |
| LUX38_RS08965 | 1841748..1841939 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LUX38_RS08970 | 1842037..1842276 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LUX38_RS08975 | 1842392..1843825 | - | 1434 | WP_232410813.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T228114 NZ_CP089383:1839248-1839350 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT228114 NZ_CP089383:c1839357-1839212 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
