Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1881976..1882121 | Replicon | chromosome |
| Accession | NZ_CP089325 | ||
| Organism | Klebsiella pneumoniae strain KP062 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1882012..1882114 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1881976..1882121 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LUX41_RS09240 | 1877106..1879166 | + | 2061 | WP_048289976.1 | oligopeptidase B | - |
| LUX41_RS09245 | 1879170..1879829 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LUX41_RS09250 | 1879908..1880138 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LUX41_RS09255 | 1880251..1880625 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LUX41_RS09260 | 1880629..1881498 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| LUX41_RS09265 | 1881515..1881853 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1881976..1882121 | - | 146 | - | - | Antitoxin |
| - | 1882012..1882114 | + | 103 | - | - | Toxin |
| LUX41_RS09270 | 1882488..1882631 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LUX41_RS09275 | 1882736..1883704 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LUX41_RS09280 | 1883861..1884514 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| LUX41_RS09285 | 1884511..1884702 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LUX41_RS09290 | 1884800..1885039 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LUX41_RS09295 | 1885155..1886588 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T228089 NZ_CP089325:1882012-1882114 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT228089 NZ_CP089325:c1882121-1881976 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
