Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2182158..2182326 | Replicon | chromosome |
| Accession | NZ_CP089315 | ||
| Organism | Klebsiella michiganensis strain K92 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2182216..2182319 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2182158..2182326 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LT984_RS10440 (LT984_10440) | 2177285..2179345 | + | 2061 | WP_014229840.1 | oligopeptidase B | - |
| LT984_RS10445 (LT984_10445) | 2179352..2180011 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| LT984_RS10450 (LT984_10450) | 2180090..2180320 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| LT984_RS10455 (LT984_10455) | 2180456..2180830 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| LT984_RS10460 (LT984_10460) | 2180835..2181704 | + | 870 | WP_089046373.1 | copper homeostasis membrane protein CopD | - |
| LT984_RS10465 (LT984_10465) | 2181721..2182059 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2182158..2182326 | - | 169 | - | - | Antitoxin |
| - | 2182216..2182319 | + | 104 | - | - | Toxin |
| LT984_RS10470 (LT984_10470) | 2182444..2183403 | - | 960 | WP_014229836.1 | spore coat protein U domain-containing protein | - |
| LT984_RS10475 (LT984_10475) | 2183418..2185748 | - | 2331 | WP_014838820.1 | fimbria/pilus outer membrane usher protein | - |
| LT984_RS10480 (LT984_10480) | 2185751..2186515 | - | 765 | WP_014229834.1 | fimbria/pilus periplasmic chaperone | - |
| LT984_RS10485 (LT984_10485) | 2186534..2187052 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T228048 NZ_CP089315:2182216-2182319 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT228048 NZ_CP089315:c2182326-2182158 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
