Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YoeB-RelB
Location 1222624..1223131 Replicon chromosome
Accession NZ_CP089309
Organism Thiocapsa bogorovii strain BBS

Toxin (Protein)


Gene name relB Uniprot ID -
Locus tag LT988_RS05485 Protein ID WP_232409219.1
Coordinates 1222624..1222884 (-) Length 87 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag LT988_RS05490 Protein ID WP_232409220.1
Coordinates 1222877..1223131 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LT988_RS05475 (LT988_05475) 1218149..1220194 - 2046 WP_232409217.1 protease Lon-related BREX system protein BrxL -
LT988_RS05480 (LT988_05480) 1220199..1222535 - 2337 WP_232409218.1 BREX-1 system phosphatase PglZ type B -
LT988_RS05485 (LT988_05485) 1222624..1222884 - 261 WP_232409219.1 Txe/YoeB family addiction module toxin Toxin
LT988_RS05490 (LT988_05490) 1222877..1223131 - 255 WP_232409220.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
LT988_RS05495 (LT988_05495) 1223190..1223492 - 303 WP_232409221.1 HigA family addiction module antitoxin -
LT988_RS05500 (LT988_05500) 1223505..1223783 - 279 WP_232409222.1 type II toxin-antitoxin system RelE/ParE family toxin -
LT988_RS05505 (LT988_05505) 1223809..1224462 - 654 WP_232409223.1 DUF4276 family protein -
LT988_RS05510 (LT988_05510) 1224459..1225514 - 1056 WP_232409224.1 AAA family ATPase -
LT988_RS05515 (LT988_05515) 1225550..1228060 - 2511 WP_232409225.1 transposase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(7-86)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 87 a.a.        Molecular weight: 10220.58 Da        Isoelectric Point: 8.0503

>T228005 WP_232409219.1 NZ_CP089309:c1222884-1222624 [Thiocapsa bogorovii]
MTRRLAWTEEAWADHVYWQSQDRKTLKRINALIADVLRTPFEGIGKPEALRENLSGFWSRRIDQANRLVYAVDTEQITII
SCHYHY

Download         Length: 261 bp

>T228005 NZ_CP123252:c104672-104418 [Providencia rettgeri]
ATGAGAATTGTATCTTTTACCGAAGCTAGAAATAGCTTGAAGAGCGTTTTGGATGCTGTTGTTAATGACGCAGATACAAC
CGTGATCACACGTCGTGATTCTGAAGATGCCGTTGTTATGTCACTGGATTATTACAATAGCTTAATGGAAACGGTTCATT
TACTTCGTTCTCCGGCAAATGCTGAGCACTTACATCGTTCAATTGCTCAATTTAAAGCGGGTAAGGTGAGCCAAAGAGAT
TTAATCGATGAGTAG

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9524.56 Da        Isoelectric Point: 5.0081

>AT228005 WP_232409220.1 NZ_CP089309:c1223131-1222877 [Thiocapsa bogorovii]
MQTITFSDARNQLKQVLDRVADDADYTVITRRDAEDAVVMSLDSFNSLMETVHLLRSPANAEHLARSIAQYRQGQTAEHP
LQHD

Download         Length: 255 bp

>AT228005 NZ_CP123252:c104425-104162 [Providencia rettgeri]
ATGAGTAGTCGTTTATTATCTTGGACTGATGAATCTTGGAATGATTATGTTTATTGGCAGACACAAGACAAGAAAACACT
TAAACGTATAAATAAACTCATCACGGATGTTAAGCGTTCTCCTTTCGAGGGCATAGGTAAACCTGAGCCACTAAAAGAAA
ACTTATCTGGTTTTTGGTCGCGCCGAATAGACGATGCGAATAGGTTAGTTTATGCGGTTGATGATAGTGCTATCACGATT
ATTTCTTGCCGTTATCACTATTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References