Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /RES-TIGR02293
Location 817959..818908 Replicon chromosome
Accession NZ_CP089309
Organism Thiocapsa bogorovii strain BBS

Toxin (Protein)


Gene name - Uniprot ID -
Locus tag LT988_RS03760 Protein ID WP_232408904.1
Coordinates 817959..818420 (-) Length 154 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID -
Locus tag LT988_RS03765 Protein ID WP_232408905.1
Coordinates 818420..818908 (-) Length 163 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LT988_RS03735 (LT988_03735) 813456..814058 + 603 WP_232408899.1 DUF938 domain-containing protein -
LT988_RS03740 (LT988_03740) 814392..814955 + 564 WP_232408900.1 DUF427 domain-containing protein -
LT988_RS03745 (LT988_03745) 814964..815440 + 477 WP_232408901.1 YbaK/EbsC family protein -
LT988_RS03750 (LT988_03750) 815563..816576 - 1014 WP_232408902.1 phosphoglycerate mutase -
LT988_RS03755 (LT988_03755) 816616..817905 - 1290 WP_232408903.1 APC family permease -
LT988_RS03760 (LT988_03760) 817959..818420 - 462 WP_232408904.1 RES domain-containing protein Toxin
LT988_RS03765 (LT988_03765) 818420..818908 - 489 WP_232408905.1 DUF2384 domain-containing protein Antitoxin
LT988_RS03770 (LT988_03770) 818975..819874 - 900 WP_232408906.1 pseudouridine synthase -
LT988_RS03775 (LT988_03775) 820222..820872 - 651 WP_232408907.1 SMC-Scp complex subunit ScpB -
LT988_RS03780 (LT988_03780) 820814..821635 - 822 WP_232410506.1 ScpA family protein -
LT988_RS03785 (LT988_03785) 821793..823010 - 1218 WP_232408908.1 tryptophan--tRNA ligase -
LT988_RS03790 (LT988_03790) 823029..823700 - 672 WP_232410507.1 site-2 protease family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

RES domain

(4-136)

Antitoxin

Antitoxin Xre/MbcA/ParS-like, toxin-binding domain

(109-159)


Sequences

Toxin        


Download         Length: 154 a.a.        Molecular weight: 16521.79 Da        Isoelectric Point: 4.8941

>T228004 WP_232408904.1 NZ_CP089309:c818420-817959 [Thiocapsa bogorovii]
MRVFRLVKERFADNALDGSGAKVYGGRWNRKGNAAVYTLDSIALAALELLVHLHRSEVLNRYCLVTLDLPDEDVLVLDDA
GLPEDWRDDPAPVSTAAIGSAWLAGGQSLALSVPSVLIPQQRNFVLNPGHAASGAVFATATLESFDLDPRLVR

Download         Length: 462 bp

>T228004 NZ_CP123252:c104425-104162 [Providencia rettgeri]
ATGAGTAGTCGTTTATTATCTTGGACTGATGAATCTTGGAATGATTATGTTTATTGGCAGACACAAGACAAGAAAACACT
TAAACGTATAAATAAACTCATCACGGATGTTAAGCGTTCTCCTTTCGAGGGCATAGGTAAACCTGAGCCACTAAAAGAAA
ACTTATCTGGTTTTTGGTCGCGCCGAATAGACGATGCGAATAGGTTAGTTTATGCGGTTGATGATAGTGCTATCACGATT
ATTTCTTGCCGTTATCACTATTAA

Antitoxin


Download         Length: 163 a.a.        Molecular weight: 17206.40 Da        Isoelectric Point: 6.1029

>AT228004 WP_232408905.1 NZ_CP089309:c818908-818420 [Thiocapsa bogorovii]
MESHARVFRIPVSSGAADAEIAPGGGATVFLRLGLPTDRAGLVAESRRGFPVTVIERLAEILDRPQQTLLRIAKIAPSTL
TRRRRSPDGRLSPEESDRVYRIAAAFGDAVDLFEGDASAASGWLGEPAKALGGTAPIEHLDTEAGATQVHDLIGRLEHGV
YS

Download         Length: 489 bp

>AT228004 NZ_CP123252:c104672-104418 [Providencia rettgeri]
ATGAGAATTGTATCTTTTACCGAAGCTAGAAATAGCTTGAAGAGCGTTTTGGATGCTGTTGTTAATGACGCAGATACAAC
CGTGATCACACGTCGTGATTCTGAAGATGCCGTTGTTATGTCACTGGATTATTACAATAGCTTAATGGAAACGGTTCATT
TACTTCGTTCTCCGGCAAATGCTGAGCACTTACATCGTTCAATTGCTCAATTTAAAGCGGGTAAGGTGAGCCAAAGAGAT
TTAATCGATGAGTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References