Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 1374752..1375280 | Replicon | chromosome |
| Accession | NZ_CP089204 | ||
| Organism | Vibrio splendidus strain 2_C04b | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | LTQ54_RS21965 | Protein ID | WP_038208214.1 |
| Coordinates | 1374990..1375280 (+) | Length | 97 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | K5UYY9 |
| Locus tag | LTQ54_RS21960 | Protein ID | WP_004730320.1 |
| Coordinates | 1374752..1375000 (+) | Length | 83 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LTQ54_RS21930 (LTQ54_21930) | 1370629..1371108 | - | 480 | WP_102497631.1 | Sbal_3080 family lipoprotein | - |
| LTQ54_RS21935 (LTQ54_21935) | 1371305..1371703 | + | 399 | WP_102456386.1 | hypothetical protein | - |
| LTQ54_RS21940 (LTQ54_21940) | 1371885..1372580 | - | 696 | WP_108091581.1 | hypothetical protein | - |
| LTQ54_RS21945 (LTQ54_21945) | 1372716..1373219 | - | 504 | WP_133153046.1 | hypothetical protein | - |
| LTQ54_RS21950 (LTQ54_21950) | 1373365..1374564 | + | 1200 | WP_108184951.1 | IS4 family transposase | - |
| LTQ54_RS21955 (LTQ54_21955) | 1374609..1374677 | - | 69 | WP_077672877.1 | DUF3265 domain-containing protein | - |
| LTQ54_RS21960 (LTQ54_21960) | 1374752..1375000 | + | 249 | WP_004730320.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| LTQ54_RS21965 (LTQ54_21965) | 1374990..1375280 | + | 291 | WP_038208214.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| LTQ54_RS21970 (LTQ54_21970) | 1375299..1375700 | - | 402 | WP_017081213.1 | hypothetical protein | - |
| LTQ54_RS21975 (LTQ54_21975) | 1375739..1375831 | - | 93 | WP_243579729.1 | DUF3265 domain-containing protein | - |
| LTQ54_RS21980 (LTQ54_21980) | 1375857..1376561 | - | 705 | WP_243579730.1 | HNH endonuclease | - |
| LTQ54_RS21985 (LTQ54_21985) | 1376693..1377484 | - | 792 | WP_243579731.1 | hypothetical protein | - |
| LTQ54_RS21990 (LTQ54_21990) | 1377575..1378600 | + | 1026 | WP_243579732.1 | IS110 family transposase | - |
| LTQ54_RS21995 (LTQ54_21995) | 1378873..1378966 | - | 94 | Protein_1156 | DUF3265 domain-containing protein | - |
| LTQ54_RS22000 (LTQ54_22000) | 1379027..1379317 | - | 291 | WP_243579733.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 1377575..1378600 | 1025 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 a.a. Molecular weight: 11289.26 Da Isoelectric Point: 10.6284
>T227804 WP_038208214.1 NZ_CP089204:1374990-1375280 [Vibrio splendidus]
MTYKLDFKKSALKEWKKLGSTLQQQFKKKLIERLDNPHVPASRLSGADNMYKIKLRQSGYRLVYKVEDDVIIVTVLAVGK
RERSDVYRKAMKRLDD
MTYKLDFKKSALKEWKKLGSTLQQQFKKKLIERLDNPHVPASRLSGADNMYKIKLRQSGYRLVYKVEDDVIIVTVLAVGK
RERSDVYRKAMKRLDD
Download Length: 291 bp
>T227804 NZ_CP123043:c4769874-4769341 [Klebsiella pneumoniae]
ATGGAGCAGCAACTGACGATTGAGATGATTGCCGATGCGTTCAGCTACGATATCACTGGATTTGATTGCGGCGAGGAAGC
GCTGAATACGTTTTTAAAAGAGCACCTCAAGCGGCAGCACGATGGACAAATCTTAAGGGGTTATGCGCTGGTCTCCGGGG
ATACCGTTCCCAGGTTGCTGGGTTATTACACCTTATCGGGGAGTTGTTTCGAGCGAGGCATGTTGCCGTCTAAAACTCAG
CAAAAGAAAATCCCGTATCAAAATGCGCCAAGCGTAACCCTCGGGCGGCTGGCCATTGATAAATCTGTTCAGGGGCAGGG
CTGGGGAGAGATGTTGGTTGCCCATGCGATGCGAGTGGTGTGGGGAGCGTCTAAAGCCGTTGGCATCTACGGATTATTTG
TTGAAGCCCTTAATGAGAAGGCTAAAGCATTCTATCTTCGTCTGGGGTTTATACAGCTCGTGGATGAAAATAGTAACTTA
CTGTTTTATCCGACCAAATCGATTGAACAGCTCTTTACTGACGATGAGTCATAA
ATGGAGCAGCAACTGACGATTGAGATGATTGCCGATGCGTTCAGCTACGATATCACTGGATTTGATTGCGGCGAGGAAGC
GCTGAATACGTTTTTAAAAGAGCACCTCAAGCGGCAGCACGATGGACAAATCTTAAGGGGTTATGCGCTGGTCTCCGGGG
ATACCGTTCCCAGGTTGCTGGGTTATTACACCTTATCGGGGAGTTGTTTCGAGCGAGGCATGTTGCCGTCTAAAACTCAG
CAAAAGAAAATCCCGTATCAAAATGCGCCAAGCGTAACCCTCGGGCGGCTGGCCATTGATAAATCTGTTCAGGGGCAGGG
CTGGGGAGAGATGTTGGTTGCCCATGCGATGCGAGTGGTGTGGGGAGCGTCTAAAGCCGTTGGCATCTACGGATTATTTG
TTGAAGCCCTTAATGAGAAGGCTAAAGCATTCTATCTTCGTCTGGGGTTTATACAGCTCGTGGATGAAAATAGTAACTTA
CTGTTTTATCCGACCAAATCGATTGAACAGCTCTTTACTGACGATGAGTCATAA
Antitoxin
Download Length: 83 a.a. Molecular weight: 9109.39 Da Isoelectric Point: 3.9610
>AT227804 WP_004730320.1 NZ_CP089204:1374752-1375000 [Vibrio splendidus]
MTTRILADVAASITELKANPMKVATSAYGEPVAVLNRNEPAFYCVPAEAYEMMMDRLEDLELLTIAKERESEESISVNID
DL
MTTRILADVAASITELKANPMKVATSAYGEPVAVLNRNEPAFYCVPAEAYEMMMDRLEDLELLTIAKERESEESISVNID
DL
Download Length: 249 bp
>AT227804 NZ_CP123043:c4770151-4769885 [Klebsiella pneumoniae]
ATGCCCGCACTTAAAAAGCAGCGTATAGATTTGAGATTAACCGATGATGATAAGAGCATCATCGAGGAAGCTGCGGCAAT
TTCTAATCAGACGATTACCCAGTTTGTGGTTGCCAGTGCCTCAGAACGTGCTGCGGAAGTGATTGAGCAGCACCGCAGAA
TGGTCCTCAATGAGCAATCATGGAGCCTGGTGATGGAGGCGATTACCCAACCGCCAGCCCCGAATGATCGACTGAAACGT
GCAGCGAAGCGTCTACAAACCAGGTAA
ATGCCCGCACTTAAAAAGCAGCGTATAGATTTGAGATTAACCGATGATGATAAGAGCATCATCGAGGAAGCTGCGGCAAT
TTCTAATCAGACGATTACCCAGTTTGTGGTTGCCAGTGCCTCAGAACGTGCTGCGGAAGTGATTGAGCAGCACCGCAGAA
TGGTCCTCAATGAGCAATCATGGAGCCTGGTGATGGAGGCGATTACCCAACCGCCAGCCCCGAATGATCGACTGAAACGT
GCAGCGAAGCGTCTACAAACCAGGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|