Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1958662..1958807 | Replicon | chromosome |
| Accession | NZ_CP089097 | ||
| Organism | Klebsiella pneumoniae strain EH13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1958698..1958800 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1958662..1958807 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LSG42_RS09565 (LSG42_09565) | 1953792..1955852 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LSG42_RS09570 (LSG42_09570) | 1955856..1956515 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LSG42_RS09575 (LSG42_09575) | 1956594..1956824 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LSG42_RS09580 (LSG42_09580) | 1956937..1957311 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LSG42_RS09585 (LSG42_09585) | 1957315..1958184 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| LSG42_RS09590 (LSG42_09590) | 1958201..1958539 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1958662..1958807 | - | 146 | - | - | Antitoxin |
| - | 1958698..1958800 | + | 103 | - | - | Toxin |
| LSG42_RS09595 (LSG42_09595) | 1959175..1959318 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LSG42_RS09600 (LSG42_09600) | 1959423..1960391 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LSG42_RS09605 (LSG42_09605) | 1960548..1961201 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| LSG42_RS09610 (LSG42_09610) | 1961198..1961389 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LSG42_RS09615 (LSG42_09615) | 1961487..1961726 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LSG42_RS09620 (LSG42_09620) | 1961842..1963275 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T227633 NZ_CP089097:1958698-1958800 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT227633 NZ_CP089097:c1958807-1958662 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
