Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2265558..2265829 | Replicon | chromosome |
| Accession | NZ_CP089034 | ||
| Organism | Escherichia coli O157:H7 strain 6535NalR | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2265688..2265791 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2265558..2265829 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LSI70_RS11355 | 2262113..2262775 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| LSI70_RS11360 | 2262799..2263455 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LSI70_RS11365 | 2263557..2263787 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LSI70_RS11370 | 2263926..2264300 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| LSI70_RS11375 | 2264304..2265176 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| LSI70_RS11380 | 2265189..2265530 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2265558..2265829 | - | 272 | - | - | Antitoxin |
| - | 2265688..2265791 | + | 104 | - | - | Toxin |
| LSI70_RS11385 | 2265926..2266582 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| LSI70_RS11390 | 2266583..2266774 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LSI70_RS11395 | 2266879..2267115 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LSI70_RS11400 | 2267233..2268672 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T227497 NZ_CP089034:2265688-2265791 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT227497 NZ_CP089034:c2265829-2265558 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
