Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3283900..3284171 | Replicon | chromosome |
| Accession | NZ_CP089031 | ||
| Organism | Escherichia coli strain 7386Nal | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3283938..3284041 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3283900..3284171 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CO543_RS16890 | 3281057..3282496 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CO543_RS16895 | 3282614..3282850 | + | 237 | WP_001295499.1 | YebV family protein | - |
| CO543_RS16900 | 3282955..3283146 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CO543_RS16905 | 3283147..3283803 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 3283900..3284171 | + | 272 | - | - | Antitoxin |
| - | 3283938..3284041 | - | 104 | - | - | Toxin |
| CO543_RS16910 | 3284199..3284540 | - | 342 | WP_000976483.1 | YebY family protein | - |
| CO543_RS16915 | 3284553..3285425 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| CO543_RS16920 | 3285429..3285803 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| CO543_RS16925 | 3285942..3286172 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CO543_RS16930 | 3286274..3286930 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| CO543_RS16935 | 3286954..3287616 | + | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T227442 NZ_CP089031:c3284041-3283938 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT227442 NZ_CP089031:3283900-3284171 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
