Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2085390..2085535 | Replicon | chromosome |
| Accession | NZ_CP089024 | ||
| Organism | Klebsiella pneumoniae strain 49210 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2085426..2085528 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2085390..2085535 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRY78_RS10025 | 2080520..2082580 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LRY78_RS10030 | 2082584..2083243 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LRY78_RS10035 | 2083322..2083552 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LRY78_RS10040 | 2083665..2084039 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LRY78_RS10045 | 2084043..2084912 | + | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| LRY78_RS10050 | 2084929..2085267 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2085390..2085535 | - | 146 | - | - | Antitoxin |
| - | 2085426..2085528 | + | 103 | - | - | Toxin |
| LRY78_RS10055 | 2085903..2086046 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LRY78_RS10060 | 2086151..2087119 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| LRY78_RS10065 | 2087276..2087929 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LRY78_RS10070 | 2087926..2088117 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LRY78_RS10075 | 2088215..2088454 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LRY78_RS10080 | 2088570..2090003 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T227409 NZ_CP089024:2085426-2085528 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT227409 NZ_CP089024:c2085535-2085390 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
