Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2078607..2078752 | Replicon | chromosome |
| Accession | NZ_CP089014 | ||
| Organism | Klebsiella pneumoniae strain 53374 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2078643..2078745 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2078607..2078752 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRZ80_RS10200 (LRZ80_10200) | 2073737..2075797 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LRZ80_RS10205 (LRZ80_10205) | 2075801..2076460 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LRZ80_RS10210 (LRZ80_10210) | 2076539..2076769 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LRZ80_RS10215 (LRZ80_10215) | 2076882..2077256 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| LRZ80_RS10220 (LRZ80_10220) | 2077260..2078129 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| LRZ80_RS10225 (LRZ80_10225) | 2078146..2078484 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2078607..2078752 | - | 146 | - | - | Antitoxin |
| - | 2078643..2078745 | + | 103 | - | - | Toxin |
| LRZ80_RS10230 (LRZ80_10230) | 2079121..2079264 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| LRZ80_RS10235 (LRZ80_10235) | 2079369..2080337 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| LRZ80_RS10240 (LRZ80_10240) | 2080494..2081147 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| LRZ80_RS10245 (LRZ80_10245) | 2081144..2081335 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LRZ80_RS10250 (LRZ80_10250) | 2081433..2081672 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LRZ80_RS10255 (LRZ80_10255) | 2081788..2083221 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T227366 NZ_CP089014:2078643-2078745 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT227366 NZ_CP089014:c2078752-2078607 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
