Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1960955..1961100 | Replicon | chromosome |
| Accession | NZ_CP089001 | ||
| Organism | Klebsiella pneumoniae strain 56661 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1960991..1961093 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1960955..1961100 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRZ77_RS09560 | 1956085..1958145 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LRZ77_RS09565 | 1958149..1958808 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LRZ77_RS09570 | 1958887..1959117 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LRZ77_RS09575 | 1959230..1959604 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| LRZ77_RS09580 | 1959608..1960477 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| LRZ77_RS09585 | 1960494..1960832 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1960955..1961100 | - | 146 | - | - | Antitoxin |
| - | 1960991..1961093 | + | 103 | - | - | Toxin |
| LRZ77_RS09590 | 1961469..1961612 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| LRZ77_RS09595 | 1961717..1962685 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| LRZ77_RS09600 | 1962842..1963495 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| LRZ77_RS09605 | 1963492..1963683 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LRZ77_RS09610 | 1963781..1964020 | - | 240 | WP_231821752.1 | YebV family protein | - |
| LRZ77_RS09615 | 1964136..1965569 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T227318 NZ_CP089001:1960991-1961093 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT227318 NZ_CP089001:c1961100-1960955 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
