Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3250822..3250967 | Replicon | chromosome |
| Accession | NZ_CP088997 | ||
| Organism | Klebsiella pneumoniae strain 49088 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3250829..3250931 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3250822..3250967 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRZ82_RS16260 (LRZ82_16260) | 3246354..3247787 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LRZ82_RS16265 (LRZ82_16265) | 3247903..3248142 | + | 240 | WP_002911393.1 | YebV family protein | - |
| LRZ82_RS16270 (LRZ82_16270) | 3248240..3248431 | + | 192 | WP_002911395.1 | YebW family protein | - |
| LRZ82_RS16275 (LRZ82_16275) | 3248428..3249081 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LRZ82_RS16280 (LRZ82_16280) | 3249238..3250206 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LRZ82_RS16285 (LRZ82_16285) | 3250311..3250454 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3250822..3250967 | + | 146 | - | - | Antitoxin |
| - | 3250829..3250931 | - | 103 | - | - | Toxin |
| LRZ82_RS16290 (LRZ82_16290) | 3251090..3251428 | - | 339 | WP_002911404.1 | YebY family protein | - |
| LRZ82_RS16295 (LRZ82_16295) | 3251445..3252314 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| LRZ82_RS16300 (LRZ82_16300) | 3252318..3252692 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LRZ82_RS16305 (LRZ82_16305) | 3252805..3253035 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LRZ82_RS16310 (LRZ82_16310) | 3253114..3253773 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LRZ82_RS16315 (LRZ82_16315) | 3253777..3255837 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T227292 NZ_CP088997:c3250931-3250829 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT227292 NZ_CP088997:3250822-3250967 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
