Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2012440..2012585 | Replicon | chromosome |
| Accession | NZ_CP088991 | ||
| Organism | Klebsiella pneumoniae strain 50700 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2012476..2012578 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2012440..2012585 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRZ81_RS09865 (LRZ81_09865) | 2007570..2009630 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LRZ81_RS09870 (LRZ81_09870) | 2009634..2010293 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LRZ81_RS09875 (LRZ81_09875) | 2010372..2010602 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LRZ81_RS09880 (LRZ81_09880) | 2010715..2011089 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LRZ81_RS09885 (LRZ81_09885) | 2011093..2011962 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| LRZ81_RS09890 (LRZ81_09890) | 2011979..2012317 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2012440..2012585 | - | 146 | - | - | Antitoxin |
| - | 2012476..2012578 | + | 103 | - | - | Toxin |
| LRZ81_RS09895 (LRZ81_09895) | 2012953..2013096 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LRZ81_RS09900 (LRZ81_09900) | 2013201..2014169 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LRZ81_RS09905 (LRZ81_09905) | 2014326..2014979 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LRZ81_RS09910 (LRZ81_09910) | 2014976..2015167 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LRZ81_RS09915 (LRZ81_09915) | 2015265..2015504 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LRZ81_RS09920 (LRZ81_09920) | 2015620..2017053 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T227265 NZ_CP088991:2012476-2012578 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT227265 NZ_CP088991:c2012585-2012440 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
