Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1823051..1823196 | Replicon | chromosome |
| Accession | NZ_CP088985 | ||
| Organism | Klebsiella pneumoniae strain 53334 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1823087..1823189 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1823051..1823196 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRZ83_RS08805 (LRZ83_08805) | 1818181..1820241 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LRZ83_RS08810 (LRZ83_08810) | 1820245..1820904 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| LRZ83_RS08815 (LRZ83_08815) | 1820983..1821213 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LRZ83_RS08820 (LRZ83_08820) | 1821326..1821700 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LRZ83_RS08825 (LRZ83_08825) | 1821704..1822573 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| LRZ83_RS08830 (LRZ83_08830) | 1822590..1822928 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1823051..1823196 | - | 146 | - | - | Antitoxin |
| - | 1823087..1823189 | + | 103 | - | - | Toxin |
| LRZ83_RS08835 (LRZ83_08835) | 1823565..1823708 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LRZ83_RS08840 (LRZ83_08840) | 1823813..1824781 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LRZ83_RS08845 (LRZ83_08845) | 1824938..1825591 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| LRZ83_RS08850 (LRZ83_08850) | 1825588..1825779 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LRZ83_RS08855 (LRZ83_08855) | 1825877..1826116 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LRZ83_RS08860 (LRZ83_08860) | 1826232..1827665 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T227220 NZ_CP088985:1823087-1823189 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT227220 NZ_CP088985:c1823196-1823051 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
