Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1(toxin)
Location 5400807..5401432 Replicon chromosome
Accession NZ_CP088982
Organism Klebsiella pneumoniae strain 53357

Toxin (Protein)


Gene name vapC Uniprot ID A0A330XB05
Locus tag LRZ78_RS25930 Protein ID WP_012737091.1
Coordinates 5400807..5401190 (-) Length 128 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID J2DFR0
Locus tag LRZ78_RS25935 Protein ID WP_004150355.1
Coordinates 5401190..5401432 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LRZ78_RS25915 (5398173) 5398173..5399075 + 903 WP_002882822.1 formate dehydrogenase subunit beta -
LRZ78_RS25920 (5399072) 5399072..5399707 + 636 WP_002882818.1 formate dehydrogenase cytochrome b556 subunit -
LRZ78_RS25925 (5399704) 5399704..5400633 + 930 WP_004150358.1 formate dehydrogenase accessory protein FdhE -
LRZ78_RS25930 (5400807) 5400807..5401190 - 384 WP_012737091.1 type II toxin-antitoxin system VapC family toxin Toxin
LRZ78_RS25935 (5401190) 5401190..5401432 - 243 WP_004150355.1 CopG family transcriptional regulator Antitoxin
LRZ78_RS25940 (5401637) 5401637..5402554 + 918 WP_012737090.1 alpha/beta hydrolase -
LRZ78_RS25945 (5402568) 5402568..5403509 - 942 WP_004178031.1 fatty acid biosynthesis protein FabY -
LRZ78_RS25950 (5403554) 5403554..5403991 - 438 WP_002882809.1 D-aminoacyl-tRNA deacylase -
LRZ78_RS25955 (5403988) 5403988..5404848 - 861 WP_004146232.1 virulence factor BrkB family protein -
LRZ78_RS25960 (5404842) 5404842..5405441 - 600 WP_004151865.1 glucose-1-phosphatase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(7-110)

Antitoxin

Predicted DNA-binding protein, ribbon-helix-helix domain

(16-47)


Sequences

Toxin        


Download         Length: 128 a.a.        Molecular weight: 14266.53 Da        Isoelectric Point: 7.2771

>T227211 WP_012737091.1 NZ_CP088982:c5401190-5400807 [Klebsiella pneumoniae]
MTSGSALFDTNILIDLFSGRCEAKQALEAWPPQNAISLITWMEVMVGAKKYHQEQRTRMALSTFNIINISQDIAERSVAL
RQEYKLKLPDAIILATAQLHRLELITRNTKGFAGIPGVVTPYEIHPE

Download         Length: 384 bp

>T227211 NZ_CP122768:c5091516-5091343 [Escherichia coli]
ATGGCACTATTCTCTAAAATATTAATTTTTTATGTGATTGGTGTGAACATATCCTTTGTCATTATCTGGTTTATCTCACA
TGAGAAAACACATATTCGTTTACTTAGTGCATTCCTGGTAGGAATAACCTGGCCAATGAGTCTGCCTGTGGCATTACTTT
TTTCTCTCTTTTAG

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9567.83 Da        Isoelectric Point: 4.3509

>AT227211 WP_004150355.1 NZ_CP088982:c5401432-5401190 [Klebsiella pneumoniae]
MMAERDMGRILLDLSDDVIQRLDDLKVQRNIPRAELLREAVEQYLEKQDRAKDTISSALGLWQDCEEDGMEYQRQLRKEW

Download         Length: 243 bp

>AT227211 NZ_CP122768:c5091840-5091544 [Escherichia coli]
ATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCATCTTATTCCTCAGTGTTCTTAAGGTT
AAGATCATTGATGTATGATATGAATTTCTCCTCTATCGTGGCTGATGAATATGGGATACCACGACAATTGAATGAAAACT
CCTTCGCAATAACGACATCGTTAGCCGCAAGTGAAATCGAAGATTTAATCAGGCTTAAATGCTTAGACTTACCGGATATT
GACTTTGACCTCAACATTATGACCGTTGATGACTATTTCCGTCAGTTTTACAAGTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A330XB05

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GGU9

References