Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RelE(toxin) |
Location | 101758..102340 | Replicon | plasmid pAQ6 |
Accession | NC_010480 | ||
Organism | Synechococcus sp. PCC 7002 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | SYNPCC7002_RS15130 | Protein ID | WP_041444097.1 |
Coordinates | 101758..102105 (-) | Length | 116 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | B1XR88 |
Locus tag | SYNPCC7002_RS15135 | Protein ID | WP_012308630.1 |
Coordinates | 102095..102340 (-) | Length | 82 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
SYNPCC7002_RS15130 | 101758..102105 | - | 348 | WP_041444097.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
SYNPCC7002_RS15135 | 102095..102340 | - | 246 | WP_012308630.1 | hypothetical protein | Antitoxin |
SYNPCC7002_RS15140 | 102358..105897 | - | 3540 | WP_012308631.1 | N-6 DNA methylase | - |
SYNPCC7002_RS15145 | 106015..106800 | + | 786 | WP_012308632.1 | hypothetical protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Non-Mobilizable plasmid | - | - | 1..124030 | 124030 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 116 a.a. Molecular weight: 13211.22 Da Isoelectric Point: 10.2062
>T22710 WP_041444097.1 NC_010480:c102105-101758 [Synechococcus sp. PCC 7002]
MPDKNPIQIETSAVFRRNLRKLGKKYRNIKQDLQPIIEALSQGELPGDQIPGVSYPVFKLRIRNSDVQKGKSGGYRLIYY
LKTDTGIILLTLYTKSERANISPEDIRQIIENYSN
MPDKNPIQIETSAVFRRNLRKLGKKYRNIKQDLQPIIEALSQGELPGDQIPGVSYPVFKLRIRNSDVQKGKSGGYRLIYY
LKTDTGIILLTLYTKSERANISPEDIRQIIENYSN
Download Length: 348 bp
>T22710 NC_010480:c102105-101758 [Synechococcus sp. PCC 7002]
ATGCCGGATAAAAACCCAATCCAAATTGAAACATCCGCTGTTTTCCGTCGCAATCTCCGTAAATTAGGCAAGAAATATCG
CAATATCAAGCAAGATCTTCAGCCCATTATCGAAGCTCTTAGCCAAGGCGAGTTACCCGGCGATCAAATTCCCGGCGTGA
GCTATCCTGTTTTTAAACTGAGAATCCGTAATAGTGATGTTCAGAAAGGAAAAAGTGGTGGTTATCGACTAATTTACTAT
CTCAAAACCGATACAGGCATTATTTTATTGACGCTGTACACAAAATCCGAAAGAGCAAATATTTCTCCCGAAGATATCCG
ACAAATCATAGAAAATTATTCAAATTAG
ATGCCGGATAAAAACCCAATCCAAATTGAAACATCCGCTGTTTTCCGTCGCAATCTCCGTAAATTAGGCAAGAAATATCG
CAATATCAAGCAAGATCTTCAGCCCATTATCGAAGCTCTTAGCCAAGGCGAGTTACCCGGCGATCAAATTCCCGGCGTGA
GCTATCCTGTTTTTAAACTGAGAATCCGTAATAGTGATGTTCAGAAAGGAAAAAGTGGTGGTTATCGACTAATTTACTAT
CTCAAAACCGATACAGGCATTATTTTATTGACGCTGTACACAAAATCCGAAAGAGCAAATATTTCTCCCGAAGATATCCG
ACAAATCATAGAAAATTATTCAAATTAG
Antitoxin
Download Length: 82 a.a. Molecular weight: 9126.25 Da Isoelectric Point: 3.9650
>AT22710 WP_012308630.1 NC_010480:c102340-102095 [Synechococcus sp. PCC 7002]
MKAQKVMATIDAQGQLTLDDPLVAIKNSRVEVIILIPEEDEADDEPTRAELLDDFRQAWHEAMTGQTLPIEKLWDDIDHA
G
MKAQKVMATIDAQGQLTLDDPLVAIKNSRVEVIILIPEEDEADDEPTRAELLDDFRQAWHEAMTGQTLPIEKLWDDIDHA
G
Download Length: 246 bp
>AT22710 NC_010480:c102340-102095 [Synechococcus sp. PCC 7002]
ATGAAAGCACAAAAAGTCATGGCAACCATTGATGCTCAGGGTCAACTTACCCTTGATGATCCTTTAGTTGCGATTAAAAA
TAGCCGTGTCGAAGTCATTATCCTCATTCCCGAAGAAGACGAAGCCGACGACGAACCCACAAGAGCAGAATTACTCGATG
ATTTCCGGCAAGCATGGCATGAAGCAATGACCGGACAAACCCTTCCCATTGAAAAACTTTGGGATGATATCGACCATGCC
GGATAA
ATGAAAGCACAAAAAGTCATGGCAACCATTGATGCTCAGGGTCAACTTACCCTTGATGATCCTTTAGTTGCGATTAAAAA
TAGCCGTGTCGAAGTCATTATCCTCATTCCCGAAGAAGACGAAGCCGACGACGAACCCACAAGAGCAGAATTACTCGATG
ATTTCCGGCAAGCATGGCATGAAGCAATGACCGGACAAACCCTTCCCATTGAAAAACTTTGGGATGATATCGACCATGCC
GGATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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