Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3114734..3114941 | Replicon | chromosome |
| Accession | NZ_CP088265 | ||
| Organism | Leclercia sp. G3L | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3114800..3114902 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3114734..3114941 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRS40_RS16315 (LRS40_16315) | 3111237..3111899 | - | 663 | WP_142489960.1 | exodeoxyribonuclease X | - |
| LRS40_RS16320 (LRS40_16320) | 3111924..3112583 | - | 660 | WP_231312091.1 | carbon-nitrogen hydrolase family protein | - |
| LRS40_RS16325 (LRS40_16325) | 3112691..3112921 | - | 231 | WP_142489958.1 | DNA polymerase III subunit theta | - |
| LRS40_RS16330 (LRS40_16330) | 3113058..3113432 | + | 375 | WP_142489957.1 | CopC domain-containing protein YobA | - |
| LRS40_RS16335 (LRS40_16335) | 3113434..3114306 | + | 873 | WP_231312092.1 | copper homeostasis membrane protein CopD | - |
| LRS40_RS16340 (LRS40_16340) | 3114321..3114659 | + | 339 | WP_231312093.1 | YebY family protein | - |
| - | 3114734..3114941 | - | 208 | - | - | Antitoxin |
| - | 3114800..3114902 | + | 103 | - | - | Toxin |
| LRS40_RS16345 (LRS40_16345) | 3115059..3116006 | - | 948 | WP_231312094.1 | VirK/YbjX family protein | - |
| LRS40_RS16350 (LRS40_16350) | 3116185..3116826 | + | 642 | WP_156264043.1 | protein-serine/threonine phosphatase | - |
| LRS40_RS16355 (LRS40_16355) | 3116827..3117018 | - | 192 | WP_142489952.1 | YebW family protein | - |
| LRS40_RS16360 (LRS40_16360) | 3117123..3117362 | - | 240 | WP_032611546.1 | YebV family protein | - |
| LRS40_RS16365 (LRS40_16365) | 3117467..3118909 | - | 1443 | WP_231312095.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3045731..3118951 | 73220 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T227024 NZ_CP088265:3114800-3114902 [Leclercia sp. G3L]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 208 bp
>AT227024 NZ_CP088265:c3114941-3114734 [Leclercia sp. G3L]
AAAGTCCGCAACAGGAAAATGCGTTTACTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAA
ATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGAC
GACGCCAGGTTTTCCAGTCCGCAGCAAAAGTGGCCTGAAAAAAAGCGT
AAAGTCCGCAACAGGAAAATGCGTTTACTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAA
ATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGAC
GACGCCAGGTTTTCCAGTCCGCAGCAAAAGTGGCCTGAAAAAAAGCGT
