Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2692715..2692914 | Replicon | chromosome |
| Accession | NZ_CP088221 | ||
| Organism | Enterobacter hormaechei strain Eh60 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2692718..2692821 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2692715..2692914 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LK764_RS12935 (LK764_12970) | 2688973..2690421 | + | 1449 | WP_196348671.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LK764_RS12940 (LK764_12975) | 2690528..2690767 | + | 240 | WP_003859885.1 | YebV family protein | - |
| LK764_RS12945 (LK764_12980) | 2690802..2691446 | - | 645 | WP_220153148.1 | protein-serine/threonine phosphatase | - |
| LK764_RS12950 (LK764_12985) | 2691614..2692594 | + | 981 | WP_220153149.1 | VirK/YbjX family protein | - |
| LK764_RS12955 (LK764_12990) | 2692640..2692837 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2692715..2692914 | + | 200 | - | - | Antitoxin |
| - | 2692718..2692821 | - | 104 | - | - | Toxin |
| LK764_RS12960 (LK764_12995) | 2692963..2693301 | - | 339 | WP_003859787.1 | YebY family protein | - |
| LK764_RS12965 (LK764_13000) | 2693318..2694187 | - | 870 | WP_045329843.1 | copper homeostasis membrane protein CopD | - |
| LK764_RS12970 (LK764_13005) | 2694189..2694560 | - | 372 | WP_045329847.1 | CopC domain-containing protein YobA | - |
| LK764_RS12975 (LK764_13010) | 2694698..2694928 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LK764_RS12980 (LK764_13015) | 2695040..2695690 | + | 651 | WP_220153150.1 | carbon-nitrogen hydrolase family protein | - |
| LK764_RS12985 (LK764_13020) | 2695715..2696377 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T226969 NZ_CP088221:c2692821-2692718 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 200 bp
>AT226969 NZ_CP088221:2692715-2692914 [Enterobacter hormaechei]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGTCT
GAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
