Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | /HTH_19(antitoxin) |
| Location | 1581735..1582523 | Replicon | chromosome |
| Accession | NZ_CP088157 | ||
| Organism | Staphylococcus aureus strain 199 | ||
Toxin (Protein)
| Gene name | - | Uniprot ID | - |
| Locus tag | LQK05_RS07720 | Protein ID | WP_072519171.1 |
| Coordinates | 1582062..1582523 (+) | Length | 154 a.a. |
Antitoxin (Protein)
| Gene name | - | Uniprot ID | A0A0E7YIA0 |
| Locus tag | LQK05_RS07715 | Protein ID | WP_000333630.1 |
| Coordinates | 1581735..1582049 (+) | Length | 105 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQK05_RS07665 (1577276) | 1577276..1578442 | - | 1167 | WP_000762532.1 | DUF2800 domain-containing protein | - |
| LQK05_RS07670 (1578439) | 1578439..1578801 | - | 363 | WP_000279445.1 | hypothetical protein | - |
| LQK05_RS07675 (1578816) | 1578816..1579139 | - | 324 | WP_000174995.1 | hypothetical protein | - |
| LQK05_RS07680 (1579218) | 1579218..1579379 | - | 162 | WP_015986189.1 | DUF1270 family protein | - |
| LQK05_RS07685 (1579391) | 1579391..1579654 | - | 264 | WP_001124160.1 | helix-turn-helix domain-containing protein | - |
| LQK05_RS07690 (1579679) | 1579679..1579894 | - | 216 | WP_001097552.1 | hypothetical protein | - |
| LQK05_RS07695 (1579949) | 1579949..1580314 | + | 366 | WP_001128433.1 | hypothetical protein | - |
| LQK05_RS07700 (1580283) | 1580283..1580528 | - | 246 | WP_001025401.1 | DUF2829 domain-containing protein | - |
| LQK05_RS07705 (1580557) | 1580557..1581333 | - | 777 | WP_072519170.1 | Rha family transcriptional regulator | - |
| LQK05_RS07710 (1581347) | 1581347..1581583 | - | 237 | WP_001121027.1 | helix-turn-helix transcriptional regulator | - |
| LQK05_RS07715 (1581735) | 1581735..1582049 | + | 315 | WP_000333630.1 | helix-turn-helix transcriptional regulator | Antitoxin |
| LQK05_RS07720 (1582062) | 1582062..1582523 | + | 462 | WP_072519171.1 | toxin | Toxin |
| LQK05_RS07725 (1582540) | 1582540..1583124 | + | 585 | WP_072519172.1 | hypothetical protein | - |
| LQK05_RS07730 (1583354) | 1583354..1583500 | + | 147 | WP_001013104.1 | hypothetical protein | - |
| LQK05_RS07735 (1583497) | 1583497..1584111 | - | 615 | WP_000191457.1 | hypothetical protein | - |
| LQK05_RS07740 (1584237) | 1584237..1585442 | + | 1206 | WP_000264747.1 | site-specific integrase | - |
| LQK05_RS07745 (1585485) | 1585485..1587511 | - | 2027 | Protein_1524 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | lukF-PV / lukS-PV / gnd | 1535872..1609817 | 73945 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 154 a.a. Molecular weight: 18083.47 Da Isoelectric Point: 4.8017
>T226867 WP_072519171.1 NZ_CP088157:1582062-1582523 [Staphylococcus aureus]
MGLYEETLIQHDYIEIREADVLPDNLDGVWLGDLILIKRGLSDREKAGILFEELAHNKLTYGDIADYSKFNNRKFENYAR
RHGFISAVPLREIVEAYNYGVRNLYELSEYLQLSEEYILEAIEHYKKIYGIGTHYGEYSITFEPLRVFKYKEI
MGLYEETLIQHDYIEIREADVLPDNLDGVWLGDLILIKRGLSDREKAGILFEELAHNKLTYGDIADYSKFNNRKFENYAR
RHGFISAVPLREIVEAYNYGVRNLYELSEYLQLSEEYILEAIEHYKKIYGIGTHYGEYSITFEPLRVFKYKEI
Download Length: 462 bp
>T226867 NZ_CP122643:c4614813-4614640 [Escherichia coli]
ATGGCACTATTCTCTAAAATATTAATTTTTTATGTGATTGGTGTGAACATATCCTTTGTCATTATCTGGTTTATCTCACA
TGAGAAAACACATATTCGTTTACTTAGTGCATTCCTGGTCGGAATAACCTGGCCAATGAGTCTGCCTGTGGCATTACTTT
TTTCTCTCTTTTAG
ATGGCACTATTCTCTAAAATATTAATTTTTTATGTGATTGGTGTGAACATATCCTTTGTCATTATCTGGTTTATCTCACA
TGAGAAAACACATATTCGTTTACTTAGTGCATTCCTGGTCGGAATAACCTGGCCAATGAGTCTGCCTGTGGCATTACTTT
TTTCTCTCTTTTAG
Antitoxin
Download Length: 105 a.a. Molecular weight: 12063.56 Da Isoelectric Point: 6.4736
>AT226867 WP_000333630.1 NZ_CP088157:1581735-1582049 [Staphylococcus aureus]
MCFSKRMKQSREKQGMTLAELGRKIGKTEATVQRYESGNIKNLKNDTIESIATALNVNPAYLMGWVEENDDEVQHRAAHL
EGELTDDEWQRVLDYADYIRSKRK
MCFSKRMKQSREKQGMTLAELGRKIGKTEATVQRYESGNIKNLKNDTIESIATALNVNPAYLMGWVEENDDEVQHRAAHL
EGELTDDEWQRVLDYADYIRSKRK
Download Length: 315 bp
>AT226867 NZ_CP122643:c4615137-4614841 [Escherichia coli]
ATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCATCTTATTCCTCAGTGTTCTTAAGGTT
AAGATCATTGATGTATGATATGAATTTCTCCTCTATCGTGGCTGATGAATATGGGATACCACGACAATTGAATGAAAACT
CCTTCGCAATAACGACATCGTTAGCCGCAAGTGAAATCGAAGATTTAATCAGGCTTAAATGCTTAGACTTACCGGATATT
GACTTTGACCTCAACATTATGACAGTTGATGATTATTTCCGTCAGTTTTACAAGTAG
ATGGAAGGTAAAAACAAGTTCAATACTTATGTTGTTTCTTTTGATTATCCATCATCTTATTCCTCAGTGTTCTTAAGGTT
AAGATCATTGATGTATGATATGAATTTCTCCTCTATCGTGGCTGATGAATATGGGATACCACGACAATTGAATGAAAACT
CCTTCGCAATAACGACATCGTTAGCCGCAAGTGAAATCGAAGATTTAATCAGGCTTAAATGCTTAGACTTACCGGATATT
GACTTTGACCTCAACATTATGACAGTTGATGATTATTTCCGTCAGTTTTACAAGTAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|