Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3332600..3332745 | Replicon | chromosome |
| Accession | NZ_CP088136 | ||
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium strain SCPM-O-B-4515 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3332602..3332705 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3332600..3332745 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRM91_RS16050 | 3329480..3330310 | + | 831 | WP_001126031.1 | recombination protein RecT | - |
| LRM91_RS16055 | 3330357..3330542 | + | 186 | WP_000280163.1 | DUF1187 family protein | - |
| LRM91_RS16060 | 3330641..3331069 | + | 429 | WP_000743301.1 | hypothetical protein | - |
| LRM91_RS16065 | 3331130..3331408 | + | 279 | WP_001575998.1 | excisionase | - |
| LRM91_RS16070 | 3331383..3332462 | + | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 3332600..3332745 | + | 146 | - | - | Antitoxin |
| - | 3332602..3332705 | - | 104 | - | - | Toxin |
| LRM91_RS16075 | 3332845..3333198 | - | 354 | WP_000722370.1 | YebY family protein | - |
| LRM91_RS16080 | 3333215..3334090 | - | 876 | WP_249895066.1 | copper homeostasis membrane protein CopD | - |
| LRM91_RS16085 | 3334091..3334465 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| LRM91_RS16090 | 3334603..3334833 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LRM91_RS16095 | 3334941..3335597 | + | 657 | WP_249895067.1 | carbon-nitrogen hydrolase family protein | - |
| LRM91_RS16100 | 3335621..3336319 | + | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sopE2 / sodCI | 3261079..3338407 | 77328 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T226772 NZ_CP088136:c3332705-3332602 [Salmonella enterica subsp. enterica serovar Typhimurium]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT226772 NZ_CP088136:3332600-3332745 [Salmonella enterica subsp. enterica serovar Typhimurium]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
