Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1917784..1917929 | Replicon | chromosome |
| Accession | NZ_CP088120 | ||
| Organism | Klebsiella pneumoniae strain 46 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1917820..1917922 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1917784..1917929 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRM33_RS09355 (LRM33_09355) | 1912914..1914974 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LRM33_RS09360 (LRM33_09360) | 1914978..1915637 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LRM33_RS09365 (LRM33_09365) | 1915716..1915946 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LRM33_RS09370 (LRM33_09370) | 1916059..1916433 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LRM33_RS09375 (LRM33_09375) | 1916437..1917306 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| LRM33_RS09380 (LRM33_09380) | 1917323..1917661 | + | 339 | WP_004189269.1 | YebY family protein | - |
| - | 1917784..1917929 | - | 146 | - | - | Antitoxin |
| - | 1917820..1917922 | + | 103 | - | - | Toxin |
| LRM33_RS09385 (LRM33_09385) | 1918296..1918439 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LRM33_RS09390 (LRM33_09390) | 1918544..1919512 | - | 969 | WP_168786284.1 | VirK/YbjX family protein | - |
| LRM33_RS09395 (LRM33_09395) | 1919669..1920322 | + | 654 | WP_071570906.1 | protein-serine/threonine phosphatase | - |
| LRM33_RS09400 (LRM33_09400) | 1920319..1920510 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LRM33_RS09405 (LRM33_09405) | 1920608..1920847 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LRM33_RS09410 (LRM33_09410) | 1920963..1922396 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T226672 NZ_CP088120:1917820-1917922 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT226672 NZ_CP088120:c1917929-1917784 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
