Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1992577..1992848 | Replicon | chromosome |
| Accession | NC_010468 | ||
| Organism | Escherichia coli ATCC 8739 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1992707..1992810 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1992577..1992848 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECOLC_RS09600 | 1989132..1989794 | - | 663 | WP_000944242.1 | exodeoxyribonuclease X | - |
| ECOLC_RS09605 | 1989818..1990474 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| ECOLC_RS09610 | 1990576..1990806 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECOLC_RS09615 | 1990945..1991319 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| ECOLC_RS09620 | 1991323..1992195 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| ECOLC_RS09625 | 1992208..1992549 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1992577..1992848 | - | 272 | - | - | Antitoxin |
| - | 1992707..1992810 | + | 104 | - | - | Toxin |
| ECOLC_RS09635 | 1992945..1993601 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| ECOLC_RS09640 | 1993602..1993793 | - | 192 | WP_001338167.1 | YebW family protein | - |
| ECOLC_RS09645 | 1993898..1994134 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| ECOLC_RS09650 | 1994252..1995691 | - | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T22658 NC_010468:1992707-1992810 [Escherichia coli ATCC 8739]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT22658 NC_010468:c1992848-1992577 [Escherichia coli ATCC 8739]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
