Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 1687192..1687844 Replicon chromosome
Accession NZ_CP087765
Organism Moraxella bovis strain SAM109246

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag LP096_RS08620 Protein ID WP_078275188.1
Coordinates 1687192..1687584 (-) Length 131 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag LP096_RS08625 Protein ID WP_264675982.1
Coordinates 1687581..1687844 (-) Length 88 a.a.

Genomic Context

LP096_RS08585LP096_RS08590LP096_RS08595LP096_RS08600LP096_RS08605LP096_RS08610LP096_RS08640LP096_RS08615LP096_RS08620LP096_RS08625LP096_RS08630LP096_RS08635LP096_RS08645LP096_RS08650LP096_RS08655
Location: 1682284..1683225 (942 bp)
Type: Others
Protein ID: WP_078275181.1
Location: 1683271..1684149 (879 bp)
Type: Others
Protein ID: WP_112741796.1
Location: 1684180..1685202 (1023 bp)
Type: Others
Protein ID: WP_078275183.1
Location: 1685282..1685740 (459 bp)
Type: Others
Protein ID: WP_078275184.1
Location: 1685737..1685973 (237 bp)
Type: Others
Protein ID: WP_078275185.1
Location: 1685976..1686542 (567 bp)
Type: Others
Protein ID: WP_078275186.1
Location: 1690003..1690458 (456 bp)
Type: Others
Protein ID: WP_264675985.1
Location: 1686539..1687069 (531 bp)
Type: Others
Protein ID: WP_078275187.1
Location: 1687192..1687584 (393 bp)
Type: Toxin
Protein ID: WP_078275188.1
Location: 1687581..1687844 (264 bp)
Type: Antitoxin
Protein ID: WP_264675982.1
Location: 1687924..1689183 (1260 bp)
Type: Others
Protein ID: WP_264675983.1
Location: 1689541..1689918 (378 bp)
Type: Others
Protein ID: WP_264675984.1
Location: 1690523..1690795 (273 bp)
Type: Others
Protein ID: WP_228157760.1
Location: 1690788..1691081 (294 bp)
Type: Others
Protein ID: WP_029103533.1
Location: 1691225..1692559 (1335 bp)
Type: Others
Protein ID: WP_112741795.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
LP096_RS08585 (LP096_08465)1682284..1683225+942WP_078275181.1hydroxymethylbilane synthase-
LP096_RS08590 (LP096_08470)1683271..1684149+879WP_112741796.1uroporphyrinogen-III synthase-
LP096_RS08595 (LP096_08475)1684180..1685202+1023WP_078275183.1hypothetical protein-
LP096_RS08600 (LP096_08480)1685282..1685740+459WP_078275184.1acyl-CoA thioesterase-
LP096_RS08605 (LP096_08485)1685737..1685973+237WP_078275185.1sulfurtransferase TusA-
LP096_RS08610 (LP096_08490)1685976..1686542+567WP_078275186.1hypothetical protein-
LP096_RS08615 (LP096_08495)1686539..1687069-531WP_078275187.1HI_0552 family protein-
LP096_RS08620 (LP096_08500)1687192..1687584-393WP_078275188.1type II toxin-antitoxin system VapC family toxinToxin
LP096_RS08625 (LP096_08505)1687581..1687844-264WP_264675982.1type II toxin-antitoxin system VapB family antitoxinAntitoxin
LP096_RS08630 (LP096_08510)1687924..1689183-1260WP_264675983.1replication-associated recombination protein A-
LP096_RS08635 (LP096_08515)1689541..1689918-378WP_264675984.1hypothetical protein-
LP096_RS08640 (LP096_08520)1690003..1690458+456WP_264675985.1type IV secretion protein Rhs-
LP096_RS08645 (LP096_08525)1690523..1690795-273WP_228157760.1type II toxin-antitoxin system YafQ family toxin-
LP096_RS08650 (LP096_08530)1690788..1691081-294WP_029103533.1type II toxin-antitoxin system RelB/DinJ family antitoxin-
LP096_RS08655 (LP096_08535)1691225..1692559-1335WP_112741795.1deoxyguanosinetriphosphate triphosphohydrolase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(3-122)

Antitoxin

SpoVT-AbrB domain

(10-50)


Sequences

Toxin        


Download         Length: 131 a.a.        Molecular weight: 14689.79 Da        Isoelectric Point: 4.7370

>T226103 WP_078275188.1 NZ_CP087765:c1687584-1687192 [Moraxella bovis]
MKYLLDTNAVIAILNASERFLTTLERHKEREIAISSIVLSELYYGAYKSQKTAQNLEKINLLPFEVLQFNSQDADKAGEI
GATLERRGTPIGFYDTLIAGQAIANDLIVITDNVREFLRVDGLQIENWLK

Download         Length: 393 bp

>T226103 NZ_CP122301:358941-359216 [Salmonella enterica]
ATGGGGCAAAGGGAAATTGAATATTCGGGACAGTTCCAGAAAGATGTAAAACGGGCACAAAAGCGTCATAAGGATGTCGG
CAAACTTAAAACACTTATGACGCTTCTGATTCACCACCCTTTTCCCCTTCCTGCCATTTATAAAGATCACCCGTTACAAG
GTTCATATAGCGGATACCGGGATGCCCATATTGAGCCTGACTGGATTCTTATTTATAAGATAACGGATGAATGCCTGCGA
TTTGAACGAACAGGAACGCATGCCGATTTATTTTAA

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 10153.49 Da        Isoelectric Point: 6.3724

>AT226103 WP_264675982.1 NZ_CP087765:c1687844-1687581 [Moraxella bovis]
MRQTATAKLFWTGNSQAVRLPKAFRFEGTEVRIKKQGRQVIIEPAETQDWAWLDKLRAMPKDDSFEEAILEGRQNLKADE
RDWGAFE

Download         Length: 264 bp

>AT226103 NZ_CP122301:358678-358938 [Salmonella enterica]
ATGGCTGCAAATGCGCTTGTTCGTGCCCGTATCGACGAAACGCTGAAGGACCAGGCGGCAGATGTCCTGGCTGAAATGGG
GTTAACCATTTCTGATTTGATACGGATTACACTGACTAAAGTTGCGCGTGAAAAGGCATTGCCTTTTGATTTGCGCATAC
CCAATGAGTTAACGTCACGAACGATAGAAAATAGCGAAGCTGGCGTTGATATTCATAAAGCCAAAGATGCTGATGATTTG
TTTGACCAGTTAGGGATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References