Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 38409..38934 Replicon plasmid pAP2044-2
Accession NZ_CP087718
Organism Acinetobacter pittii strain AP2044

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag LPS07_RS20515 Protein ID WP_005130374.1
Coordinates 38647..38934 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag LPS07_RS20510 Protein ID WP_005130375.1
Coordinates 38409..38657 (+) Length 83 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LPS07_RS20485 (LPS07_20485) 35484..36398 - 915 WP_004843977.1 replication initiation protein RepM -
LPS07_RS20490 (LPS07_20490) 36849..37478 + 630 WP_005130378.1 AAA family ATPase -
LPS07_RS20495 (LPS07_20495) 37475..37714 + 240 WP_005130377.1 hypothetical protein -
LPS07_RS20500 (LPS07_20500) 37830..37898 + 69 Protein_40 helix-turn-helix domain-containing protein -
LPS07_RS20505 (LPS07_20505) 37981..38406 + 426 WP_005130376.1 hypothetical protein -
LPS07_RS20510 (LPS07_20510) 38409..38657 + 249 WP_005130375.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
LPS07_RS20515 (LPS07_20515) 38647..38934 + 288 WP_005130374.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
LPS07_RS20520 (LPS07_20520) 39095..39244 - 150 WP_079878061.1 DUF4113 domain-containing protein -
LPS07_RS20525 (LPS07_20525) 39737..40303 + 567 WP_000678311.1 recombinase family protein -
LPS07_RS20530 (LPS07_20530) 40525..41139 - 615 WP_081318675.1 hypothetical protein -
LPS07_RS20535 (LPS07_20535) 41248..41727 - 480 WP_139118978.1 hypothetical protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid msr(E) / mph(E) / tet(39) / cmlB1 / sul2 / aph(3'')-Ib / aph(6)-Id - 1..43577 43577


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(7-83)

Antitoxin


No domain identified.



Sequences


Toxin        


Download         Length: 96 a.a.        Molecular weight: 11146.00 Da        Isoelectric Point: 10.1961

>T226091 WP_005130374.1 NZ_CP087718:38647-38934 [Acinetobacter pittii]
MTYKLDFLEEALAEWNKLNPSIKQPLKKKLIKVLENPRIPKNKLPGHPNRYKIKLRSVGYRLVYEVIDDEVIFIVIAVGR
RENNAVYDEANSRHS

Download         Length: 288 bp

>T226091 NZ_CP121845:3845167-3846321 [Aeromonas veronii]
ATGGCCAGCCTGACGGTCTACATGAACGGATACCGGGTAGGTACCTTTACCAAGGCGACCAATGGTGCTCACCAATTTCA
GTACGATGAATCGTGGGTGAAGTTGCCAGGCAGCCGCCCCATCTCGCTCTCCATGCCATTACGCCAGCAGCGCTACCAGG
GCGATGAGGCCTATAACTTCTTCGATAATCTGCTGCCAGATAACCCGGAAGTAAGAAACCGGGTGGTGGCGCGCTATCAA
GCCGATTCCACCCAACCCTTTGATCTGCTCAGTTGCATTGGCCAGGACAGCGTGGGGGCATTGCAACTGGTGGCTCAGGG
CAGACCTGTGCCAGACGTTAAGCGCATTGAGTGCAAGCCGCTCTCTGACGCCGAACTGGAGCAGATCATGACCAGCTACC
AGCAAGGGATCCCGCTTGGTATGGTGAGGGAAGAGGACGATTTTCGGATATCCATCGCCGGGGCTCAGGAAAAGACCGCG
TTACTCTACCTCGACAACCGTTGGTGCTTACCGCATGCAGCGACCCCAACCACCCACATTATCAAGCTGCCCATTGGCAA
GATCGAAAGCCACTCCTACTCGATAGACCTCTCCCAGAGCGTAGAAAACGAATATCTCTGCACCCTGATCGCCAAAGCAT
TGGGTCTTCCGGTTCCCCATTGCTTCATCATGCAGGTCGGCAAGGTCAAGGCTCTGGCGGTGGAACGCTTCGATCGGCGC
TACGCCACGGATCGCAGTTGGATCATGCGCCTGCCCCAAGAGGACTTCTGCCAGGTGTTGAATGTACCGTCAGCACGCAA
GTACGAGAGCCATGGTGGACCGGGCATTGCTGACATCATGACGACCCTGCTGGGATCGGCCACGCCGGAGCAGGATCGGT
ACCTGTTTATGAAGTCTCAGGTGTTGTTCTGGCTGCTGGCTGCCACTGATGGCCATGCCAAGAATTTCTCGGTGTTTATC
GAACCTGAAGGGCGTTTCCGGCTTACACCGTTTTACGACATCCTTTCCATGTATCCTGCATTTGGTGGTAAAGGATTACA
TCCCCGTGATGCCAAGTTGGCCATGGGGCTTACTGCAACCAAGGGCAAAAAAATACGCGATAGAGCAGATATTTCCTCGC
CATTTTTATCAAACGGCCAAGGCGATTGGTTTTGA

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9258.77 Da        Isoelectric Point: 5.0491

>AT226091 WP_005130375.1 NZ_CP087718:38409-38657 [Acinetobacter pittii]
MTQLIHARMTASITELKKSPMDTVLAGKGEPVAILNRNIPAFYCVPADLYETMMEQLEDLELNKIADARANQKRIRVNID
DL

Download         Length: 249 bp

>AT226091 NZ_CP121845:3844913-3845167 [Aeromonas veronii]
ATGAAAGTAACCAGCGCCAAGCAACTTAGTGCCTGTCTCAAGGATGCCAGGCTTTCGCAAAAGCTCTCCCAAGGCAAAGT
GGCCGGCAAGGTGGGGATCAGGCAGGACACGGTGTCCAGCTTCGAGCTCAATCCCGAGTCAACCAAGCTGGAGACCTTGT
TCAAGATCCTCGCCGCACTGGAACTCTCCCTCGATATCAGGCCCCGCACCGATCCTGCGGAAAACGCCACGCCTGGTTGG
AAGGAGGAGTGGTAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure

References