Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parE_1-relB/- |
| Location | 1858654..1859048 | Replicon | chromosome |
| Accession | NZ_CP087696 | ||
| Organism | Xylella taiwanensis strain PLS16B | ||
Toxin (Protein)
| Gene name | parE_1 | Uniprot ID | - |
| Locus tag | LPH57_RS07540 | Protein ID | WP_200866186.1 |
| Coordinates | 1858654..1858857 (-) | Length | 68 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | Z9JJI0 |
| Locus tag | LPH57_RS07545 | Protein ID | WP_038270756.1 |
| Coordinates | 1858854..1859048 (-) | Length | 65 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPH57_RS07520 (LPH57_07520) | 1853668..1853808 | + | 141 | WP_160165149.1 | hypothetical protein | - |
| LPH57_RS07525 (LPH57_07525) | 1854195..1855205 | - | 1011 | WP_038270757.1 | serine protease | - |
| LPH57_RS07530 (LPH57_07530) | 1856441..1857832 | + | 1392 | WP_051482280.1 | right-handed parallel beta-helix repeat-containing protein | - |
| LPH57_RS07535 (LPH57_07535) | 1857905..1858519 | - | 615 | WP_230428270.1 | recombinase family protein | - |
| LPH57_RS07540 (LPH57_07540) | 1858654..1858857 | - | 204 | WP_200866186.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| LPH57_RS07545 (LPH57_07545) | 1858854..1859048 | - | 195 | WP_038270756.1 | hypothetical protein | Antitoxin |
| LPH57_RS07550 (LPH57_07550) | 1859292..1859687 | + | 396 | WP_230428271.1 | DUF4158 domain-containing protein | - |
| LPH57_RS07555 (LPH57_07555) | 1859879..1860196 | + | 318 | WP_230430820.1 | hypothetical protein | - |
| LPH57_RS07560 (LPH57_07560) | 1860330..1860413 | + | 84 | Protein_1494 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LPH57_RS07565 (LPH57_07565) | 1860525..1860806 | + | 282 | WP_038270748.1 | XRE family transcriptional regulator | - |
| LPH57_RS07570 (LPH57_07570) | 1861076..1862205 | - | 1130 | Protein_1496 | DUF5710 domain-containing protein | - |
| LPH57_RS07575 (LPH57_07575) | 1862381..1863218 | + | 838 | Protein_1497 | VirB8/TrbF family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 68 a.a. Molecular weight: 7625.95 Da Isoelectric Point: 11.2308
>T226054 WP_200866186.1 NZ_CP087696:c1858857-1858654 [Xylella taiwanensis]
MTLPLHWRTSARDDLASLIRFIAYENPLTARRMKVLIEASVLLASAHPYMFRPGRVPGTREIVAHPN
MTLPLHWRTSARDDLASLIRFIAYENPLTARRMKVLIEASVLLASAHPYMFRPGRVPGTREIVAHPN
Download Length: 204 bp
>T226054 NZ_CP121766:c4143302-4142547 [Pseudomonas aeruginosa]
GTGAGCGAGATCTGGCGACAGTGCAAGGGTGAGCGGCATGTCCGACCGCTCCAGGGGCGGCTGGTGCGGTTGGTGGAGAG
CCAGGAGCAGGTGGCGACCCTGCAATTGGTCGACACCCTGGAAGAACAGGCGTTGCTCGAGGAACTGCTCGAGTCGAGCA
AGCCGCCGGTGCCGGCGGATGCCGAGCCATTGCATTACCTGTTGAAGACCCCGTTCCGTTATCCGCCCTTGCGTTGGGGG
TCGCGGTTTGGCCGTCGTCACGAGCCAAGCCTGTTCTACGCCGCGTTGAAGCTGGAAACGGCCATGGCCGAAAGCGCGTA
TTACCGTTGTGTCCTGTGGAGTGGCATGGCGGTGCCGCCACCGAGCGGGAGGATTCTGTCCGAGCACGCTTCGTTCGAGG
CGGGCTGGAAGGTGGAGCGGGGAATCCGTCTGCAGGCGCCGCCTTTCTCCGATCACGAGGCTGCGCTGACCGACATCGCC
GACTACCGCGCTCCCCAGGAACTGGGAAGTGCCATGCGCAGCGCCGGGGTGCAGGCATTCGAATACCGTTCGGCGCGTTG
CCCGGAGCGCGGCTGCAATGTCGCCCTGTTCACGCCCGCGGCCTTCACCGAAAAGCGTCCTCGCAACCTGACGCCCTGGC
TGTGCGAAACCACGGCCGGTTACGTGGCCTTCAAGCCGGCGCATGTGCCGGGGTCGCCGAAAATCTTCTCCTGGGAGCTG
TTCCTGGTGGACGGAAAGTTGCCGCATCCGGCGTGA
GTGAGCGAGATCTGGCGACAGTGCAAGGGTGAGCGGCATGTCCGACCGCTCCAGGGGCGGCTGGTGCGGTTGGTGGAGAG
CCAGGAGCAGGTGGCGACCCTGCAATTGGTCGACACCCTGGAAGAACAGGCGTTGCTCGAGGAACTGCTCGAGTCGAGCA
AGCCGCCGGTGCCGGCGGATGCCGAGCCATTGCATTACCTGTTGAAGACCCCGTTCCGTTATCCGCCCTTGCGTTGGGGG
TCGCGGTTTGGCCGTCGTCACGAGCCAAGCCTGTTCTACGCCGCGTTGAAGCTGGAAACGGCCATGGCCGAAAGCGCGTA
TTACCGTTGTGTCCTGTGGAGTGGCATGGCGGTGCCGCCACCGAGCGGGAGGATTCTGTCCGAGCACGCTTCGTTCGAGG
CGGGCTGGAAGGTGGAGCGGGGAATCCGTCTGCAGGCGCCGCCTTTCTCCGATCACGAGGCTGCGCTGACCGACATCGCC
GACTACCGCGCTCCCCAGGAACTGGGAAGTGCCATGCGCAGCGCCGGGGTGCAGGCATTCGAATACCGTTCGGCGCGTTG
CCCGGAGCGCGGCTGCAATGTCGCCCTGTTCACGCCCGCGGCCTTCACCGAAAAGCGTCCTCGCAACCTGACGCCCTGGC
TGTGCGAAACCACGGCCGGTTACGTGGCCTTCAAGCCGGCGCATGTGCCGGGGTCGCCGAAAATCTTCTCCTGGGAGCTG
TTCCTGGTGGACGGAAAGTTGCCGCATCCGGCGTGA
Antitoxin
Download Length: 65 a.a. Molecular weight: 7289.11 Da Isoelectric Point: 4.5007
>AT226054 WP_038270756.1 NZ_CP087696:c1859048-1858854 [Xylella taiwanensis]
MKTTPLDPIISEFATEEQAASYDRWFRAKVQASLDDSRPSVPHDQVMAEMDAIIAEAEQHRKQT
MKTTPLDPIISEFATEEQAASYDRWFRAKVQASLDDSRPSVPHDQVMAEMDAIIAEAEQHRKQT
Download Length: 195 bp
>AT226054 NZ_CP121766:c4143805-4143437 [Pseudomonas aeruginosa]
ATGAGCGCTCTCATCAAGGAACGTCCCAGCGCCGATGCTGTCCTGGCCAAGGCCGTCCTGGCCGCGCGCGAGCAATTGGG
GCTGACGCAGCTCGAACTGGCCGGCATCGTCGGCGTCGATCGCAGCGCCATCAGCCGCTGGAAGACCCAGGGCCTGCGGG
TGGACAGCAAGACCGGCGAGCTGGCTCTGCTGCTGGTGCGGGTCTATCGCGCACTGTATGCCCTGTTCGGCGGGCAGCAG
GAGGACATGCGCCACTTCCTGCGCACTCCCAACCATCACCTGGCGGGCGAGCCGCTGGCACTGATGGGACAGGTGCAGGG
CCTGGTTCATGTGCTGGAATACCTCGATGCGATCCGCGGCAAGGTCTGA
ATGAGCGCTCTCATCAAGGAACGTCCCAGCGCCGATGCTGTCCTGGCCAAGGCCGTCCTGGCCGCGCGCGAGCAATTGGG
GCTGACGCAGCTCGAACTGGCCGGCATCGTCGGCGTCGATCGCAGCGCCATCAGCCGCTGGAAGACCCAGGGCCTGCGGG
TGGACAGCAAGACCGGCGAGCTGGCTCTGCTGCTGGTGCGGGTCTATCGCGCACTGTATGCCCTGTTCGGCGGGCAGCAG
GAGGACATGCGCCACTTCCTGCGCACTCCCAACCATCACCTGGCGGGCGAGCCGCTGGCACTGATGGGACAGGTGCAGGG
CCTGGTTCATGTGCTGGAATACCTCGATGCGATCCGCGGCAAGGTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|