Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | parE_1-relB/- |
Location | 1851543..1851937 | Replicon | chromosome |
Accession | NZ_CP087677 | ||
Organism | Xylella taiwanensis strain PLS15A |
Toxin (Protein)
Gene name | parE_1 | Uniprot ID | - |
Locus tag | LPH39_RS07425 | Protein ID | WP_200866186.1 |
Coordinates | 1851543..1851746 (-) | Length | 68 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | Z9JJI0 |
Locus tag | LPH39_RS07430 | Protein ID | WP_038270756.1 |
Coordinates | 1851743..1851937 (-) | Length | 65 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
LPH39_RS07405 (LPH39_07405) | 1846557..1846697 | + | 141 | WP_160165149.1 | hypothetical protein | - |
LPH39_RS07410 (LPH39_07410) | 1847084..1848094 | - | 1011 | WP_038270757.1 | serine protease | - |
LPH39_RS07415 (LPH39_07415) | 1849330..1850721 | + | 1392 | WP_051482280.1 | right-handed parallel beta-helix repeat-containing protein | - |
LPH39_RS07420 (LPH39_07420) | 1850794..1851456 | - | 663 | WP_268746643.1 | recombinase family protein | - |
LPH39_RS07425 (LPH39_07425) | 1851543..1851746 | - | 204 | WP_200866186.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
LPH39_RS07430 (LPH39_07430) | 1851743..1851937 | - | 195 | WP_038270756.1 | hypothetical protein | Antitoxin |
LPH39_RS07435 (LPH39_07435) | 1852181..1852576 | + | 396 | WP_230428271.1 | DUF4158 domain-containing protein | - |
LPH39_RS07440 (LPH39_07440) | 1852705..1853085 | + | 381 | WP_038270750.1 | hypothetical protein | - |
LPH39_RS07445 (LPH39_07445) | 1853219..1853302 | + | 84 | Protein_1469 | type II toxin-antitoxin system RelE/ParE family toxin | - |
LPH39_RS07450 (LPH39_07450) | 1853414..1853695 | + | 282 | WP_038270748.1 | XRE family transcriptional regulator | - |
LPH39_RS07455 (LPH39_07455) | 1853965..1855094 | - | 1130 | Protein_1471 | DUF5710 domain-containing protein | - |
LPH39_RS07460 (LPH39_07460) | 1855270..1856107 | + | 838 | Protein_1472 | VirB8/TrbF family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 68 a.a. Molecular weight: 7625.95 Da Isoelectric Point: 11.2308
>T225962 WP_200866186.1 NZ_CP087677:c1851746-1851543 [Xylella taiwanensis]
MTLPLHWRTSARDDLASLIRFIAYENPLTARRMKVLIEASVLLASAHPYMFRPGRVPGTREIVAHPN
MTLPLHWRTSARDDLASLIRFIAYENPLTARRMKVLIEASVLLASAHPYMFRPGRVPGTREIVAHPN
Download Length: 204 bp
>T225962 NZ_CP121632:3182684-3183073 [Acinetobacter baumannii]
TTGATCAACCATTTGAATTTTAAGCTGAAATATAGTCGTTTTTCGATTATATTTCAGTTTTTTATTGGCTTAAGCTTAGC
AGTTCTATTTTATCAATTAATGCCGTTACTATGGTGGTTAGTTGTAATCAGCTTACTATTTATCAGCTTTATTTTCTTTT
TAAAGCGTCCGCAGCTTGCACAAATTGCTTATTTAGATAAAAAACTATGGTCGCTTGCTTATAAGTCACAGAACACCGTT
TCTCGCGTCAAAATTTTAAAAATAATTGATTGTCAGATTTTCATAGTGATCTATTTTGAAGGTCATAAAACACTAACTTC
TATCATTTGGTTTGATCAAATGTCATTAGCAGAGTGGAAAAAGCTTAAAACTTTAGAAAAACTCTATTAA
TTGATCAACCATTTGAATTTTAAGCTGAAATATAGTCGTTTTTCGATTATATTTCAGTTTTTTATTGGCTTAAGCTTAGC
AGTTCTATTTTATCAATTAATGCCGTTACTATGGTGGTTAGTTGTAATCAGCTTACTATTTATCAGCTTTATTTTCTTTT
TAAAGCGTCCGCAGCTTGCACAAATTGCTTATTTAGATAAAAAACTATGGTCGCTTGCTTATAAGTCACAGAACACCGTT
TCTCGCGTCAAAATTTTAAAAATAATTGATTGTCAGATTTTCATAGTGATCTATTTTGAAGGTCATAAAACACTAACTTC
TATCATTTGGTTTGATCAAATGTCATTAGCAGAGTGGAAAAAGCTTAAAACTTTAGAAAAACTCTATTAA
Antitoxin
Download Length: 65 a.a. Molecular weight: 7289.11 Da Isoelectric Point: 4.5007
>AT225962 WP_038270756.1 NZ_CP087677:c1851937-1851743 [Xylella taiwanensis]
MKTTPLDPIISEFATEEQAASYDRWFRAKVQASLDDSRPSVPHDQVMAEMDAIIAEAEQHRKQT
MKTTPLDPIISEFATEEQAASYDRWFRAKVQASLDDSRPSVPHDQVMAEMDAIIAEAEQHRKQT
Download Length: 195 bp
>AT225962 NZ_CP121632:3182420-3182677 [Acinetobacter baumannii]
ATGTCTGAAGAAATGACCTTGGAAGAACGTAAAGTAATCTATCGCGCACGTCGTGGTTTAAAGGAAATTGATGTCTATTT
TGACCCTTATGTGAAAAATTATTATTTAAAGGCAGACCCGGCAGAAAAAGCGTTGTTTGCTGAGTTGGTAGAACAGGAAG
ACCCTGATTTACTAGATTGGTTTATGGAAGTATCAGAACCACCACGTACCGAATTACGTGACTTTATCTATAAATTAAAA
CACTATGTTCATGGTTAA
ATGTCTGAAGAAATGACCTTGGAAGAACGTAAAGTAATCTATCGCGCACGTCGTGGTTTAAAGGAAATTGATGTCTATTT
TGACCCTTATGTGAAAAATTATTATTTAAAGGCAGACCCGGCAGAAAAAGCGTTGTTTGCTGAGTTGGTAGAACAGGAAG
ACCCTGATTTACTAGATTGGTTTATGGAAGTATCAGAACCACCACGTACCGAATTACGTGACTTTATCTATAAATTAAAA
CACTATGTTCATGGTTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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