Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1999358..1999503 | Replicon | chromosome |
| Accession | NZ_CP087663 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain DD01845 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1999394..1999496 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1999358..1999503 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMH56_RS09740 (LMH56_09740) | 1994488..1996548 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| LMH56_RS09745 (LMH56_09745) | 1996552..1997211 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| LMH56_RS09750 (LMH56_09750) | 1997290..1997520 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| LMH56_RS09755 (LMH56_09755) | 1997633..1998007 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| LMH56_RS09760 (LMH56_09760) | 1998011..1998880 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| LMH56_RS09765 (LMH56_09765) | 1998897..1999235 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1999358..1999503 | - | 146 | - | - | Antitoxin |
| - | 1999394..1999496 | + | 103 | - | - | Toxin |
| LMH56_RS09770 (LMH56_09770) | 1999871..2000014 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| LMH56_RS09775 (LMH56_09775) | 2000119..2001087 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| LMH56_RS09780 (LMH56_09780) | 2001244..2001897 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| LMH56_RS09785 (LMH56_09785) | 2001894..2002085 | - | 192 | WP_002911395.1 | YebW family protein | - |
| LMH56_RS09790 (LMH56_09790) | 2002183..2002422 | - | 240 | WP_002911393.1 | YebV family protein | - |
| LMH56_RS09795 (LMH56_09795) | 2002538..2003971 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T225888 NZ_CP087663:1999394-1999496 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT225888 NZ_CP087663:c1999503-1999358 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
